| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1000 |
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| Symbol | |
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| ID | 4578776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 976763 |
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| End bp | 979738 |
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| Gene Length | 2976 bp |
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| Protein Length | 991 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639768322 |
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| Product | phage tape measure protein |
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| Protein accession | YP_914807 |
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| Protein GI | 119383751 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3941] Mu-like prophage protein |
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| TIGRFAM ID | [TIGR02675] tape measure domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.734571 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACCG ATCTCGAAAA GCTGGTTGTC CAGCTCTCTG CTGACATCAA GGGCTATGAG
CGCGAAATGC GCAAGGCCGT TGGCGTGACG AACCGGCAAG CGCGCGACAT CGAAAAGCGG
TTCCTCGCGA TGCAGCGCAA TCTGGATGGT ATCGGATCGC GGGCCGCCAA GTCGCTGATC
GCGCCGTTTA CCGGCATTGC TGCGGCGCTT GGTGGCCGGG AACTGATCCG CATGACTGGG
CAGTGGACCG ACCTGACCAG CCGGGTGAAC CTGGCGGCAG GCAGCATGGA GAAAGGCAAT
GAGGTCATGC GGCGCGTCAG CGAGATGGCG CGTCGCACCT ATTCCGACCT CAGCCAGACC
GCCGAGGGAT ACCTGGCATT CTCGACCACG CTGACCGAAC TTGGCGTTTC GACGGATCGC
CAACTGGACT TCGTGGAAAG CCTGAACAAC GCCCTGGTTG TGTCCGGCGC CAAGGGCCAG
ACCGCCGAAC GTGTCATGAG TGCGCTCTCC AAGGCGATGG CGCTCGGATC GCTCCAGGGT
GACAACCTGA ATACGGTGAT CGATTCCGGC GGACGTGTCG CGCAGGCCCT CGCCGATTCC
ATGGGTGTCA CCACCATGGA ATTGCGCAAG CTGGGATCGG AAGGGAAAAT CGGGCGCCGC
GAACTGCTCG GCATCTCGAA GGAGATGGAG AAGCTCCGGC GCGAGGCGGG CGAGATGCCC
ACCACGATCC AGGACGGCTT CATGCTTCTG AACAACGCCC TGCTGGAATA TGTCGGGCGT
GGGGACGATG CCGTCGGGAT GTCGGGCCGG ATCGCCGAGG CGCTTACGGT CATCGCCGAC
AATTTCGATA CCGTCGCCGA TTCCGGCCTG AAGCTTGCCG CGGTTCTCGC GGCCGGCATG
CTCGGCCGGT CTATCGGGGG CATGATCACC AAGCTGGGCG CCGCAACCGG GGTGTTGATC
AAGTTTGGCG CCGCATTGCG CGCGGCTACC TCCATGGCCA GCGTCGGCAC CGCAATCAGT
GGGTTGAGCG CGGCGGCGGG GCCGCTGGTC ATGGTTATCG GAGGTCTGCT CGCTGGCGGT
GTCCTGCTTT ACTCGGATCG TGCCCGAGAG GCAGAACAGC GCAGCAAGGA TCTGCGGGAT
GAGCTGCAAC GCCTGGGGCT TTACGCACCG GATGCAGCCG TGGCGCTGGA AGAGGTCGCA
GATGCTGCCG ATGGTATCGG CACCGAGGAT CAGTTGGCCC GCATCGAGCG GTTCCGCAAG
GGCCTCGAAG ATATCAAGGG CACTGGCGGG CTTTGGTCCT GGATCAGTGG TGGCGACGGC
GAACTGGACG GGTTGATCCA GCAGGTAGAC CGCTTTTACC ATGCCTTTGA TCAGGCTGAT
CTTCCGCTGG TCCGGCAGTT GCGCGATCTG GCAAAGGCTT ATCAGGACAA AGAGATTTCC
GCCGAAAGCT TTGCTCGCAG CGTTGCGGCC GCCGATTTGG AGGGCGCAGG GCGTGCAGCG
CGTGAATATG CAGCGGCATT GCGCGAAATT GCGGAGCGCT CGAACGCACT TACCACCGGG
CTCCTGTTCG ATGGCGTTGC AGTCGAAATC GATGCGGCAA CTGCATCTGT GGAGGGGCTT
CTGGAAGAGC TGCACTTCGT CGCCAACCTT CAAGGTCTCG GCGACGTGGT TGTGCAGGAA
ATCAGGGATG TCATCGCGGA AATGAACAAG GGCAAGAAGT CCGCCCAAGA GGCTGCCGAT
GAGATCGAGG CTCTCGGAAA CACCCGCGCA GACTTTAATG GCCTGCACGG TGATATCGCA
AATGCCATCA AGGCCCTTGG TGAACTGCGC GCGGCGGCGA TCCGAACCGC ATCGACCATC
GCGGCCACGG TGGCGATGCG CCCGAGTTCT GGTGGCGACG ACACCTCGCT TGATCGCCAG
AATGAGGCAT CGGCGGCTTA CATTGCCGAG CATAAGCGTC GCCTGGACCT GACCCGTGAG
CAGGTGTCGC TGGAAAAGGA GATGGAGCGG ATCACGAAAG ATGCTGCCCA GAACCAGGCT
GTGTTGACGC AAGAGCAAAT CCGCCAGATG GCGGTTGCGA ATCTTGCCGC CGAGGCCCGT
CGCGCCGAGG AAGGCCGTTC CGGGCGCTCG GGCGGCGGCC GGAAGTCCGG CGGCGGAAAG
GGCAAGAAGG GAACGACGGT CACCGACATA TTCGAGGACG CTGGCCGCGA TCTGGAAAAC
CTGGAGCGGC AGATAGAGCT GGTCGGCAAG TCGGCGCAGG AGACTGCCAA GCTGCGTGCG
CAGTGGGAAT TGCTGGATGC CGCGAAGAAA GCCGGCCTGC CCATCGACGA CAAGCTGCGC
CAGAACATCC TGGAGCATGC CGAACATGTC GGATACCTCA CCGATCAGCT GGAAAAGGCC
GAGATTGCGC AGCAGCAATT CGACCAGGCG ATCGATGGCG TCGCAGATGC CTTTGCGGGT
GCTTTGATGG CCGGTGAAAG CTTGCGGGAT GGACTGGCGC AGGTGCTCAA GCAGATCGCA
GCAGATATCA TCAACAGCGG CATTCGGAAC GCCCTCATCG GCCAGTTCGG CGGGGGAGGT
GGTGGGATCC TCGGCGGTCT CTGGCAGTCT ATGATGGTCG GCGGTGACAG GCTGACCGGG
GCGTTGCGTC TGGCTGGTCT TCCGGCTCGG GCGAATGGTG GGCCGGTGCA GGCTGGTCAG
ATGTATATGA CCGGCGAGAA GGGGCCGGAG CCGTTCGTCC CTGCGGTGAA CGGTCGTATC
CTCAGCGTCG CACAGGCACA GGCGGCGTTG CGCGGGCGCG CCGGCGGGCG TTCGGGCGGG
ATCAACGCCA CCTTCGCCCC GAACATCAGC ATCGCGCCCG GTGTCACCCA AGCCGAACTG
GCCATGACCA TGGCGGCCGC CCAACGGGAG TATGAGCAGA AGTTCCTGCC CATGCTGCAA
AAGCACATGC CCAGCTATAA TGAGCGGTAT ACCTGA
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| Protein sequence | MATDLEKLVV QLSADIKGYE REMRKAVGVT NRQARDIEKR FLAMQRNLDG IGSRAAKSLI
APFTGIAAAL GGRELIRMTG QWTDLTSRVN LAAGSMEKGN EVMRRVSEMA RRTYSDLSQT
AEGYLAFSTT LTELGVSTDR QLDFVESLNN ALVVSGAKGQ TAERVMSALS KAMALGSLQG
DNLNTVIDSG GRVAQALADS MGVTTMELRK LGSEGKIGRR ELLGISKEME KLRREAGEMP
TTIQDGFMLL NNALLEYVGR GDDAVGMSGR IAEALTVIAD NFDTVADSGL KLAAVLAAGM
LGRSIGGMIT KLGAATGVLI KFGAALRAAT SMASVGTAIS GLSAAAGPLV MVIGGLLAGG
VLLYSDRARE AEQRSKDLRD ELQRLGLYAP DAAVALEEVA DAADGIGTED QLARIERFRK
GLEDIKGTGG LWSWISGGDG ELDGLIQQVD RFYHAFDQAD LPLVRQLRDL AKAYQDKEIS
AESFARSVAA ADLEGAGRAA REYAAALREI AERSNALTTG LLFDGVAVEI DAATASVEGL
LEELHFVANL QGLGDVVVQE IRDVIAEMNK GKKSAQEAAD EIEALGNTRA DFNGLHGDIA
NAIKALGELR AAAIRTASTI AATVAMRPSS GGDDTSLDRQ NEASAAYIAE HKRRLDLTRE
QVSLEKEMER ITKDAAQNQA VLTQEQIRQM AVANLAAEAR RAEEGRSGRS GGGRKSGGGK
GKKGTTVTDI FEDAGRDLEN LERQIELVGK SAQETAKLRA QWELLDAAKK AGLPIDDKLR
QNILEHAEHV GYLTDQLEKA EIAQQQFDQA IDGVADAFAG ALMAGESLRD GLAQVLKQIA
ADIINSGIRN ALIGQFGGGG GGILGGLWQS MMVGGDRLTG ALRLAGLPAR ANGGPVQAGQ
MYMTGEKGPE PFVPAVNGRI LSVAQAQAAL RGRAGGRSGG INATFAPNIS IAPGVTQAEL
AMTMAAAQRE YEQKFLPMLQ KHMPSYNERY T
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