| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0663 |
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| Symbol | |
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| ID | 4578968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 642700 |
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| End bp | 644766 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639767981 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_914471 |
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| Protein GI | 119383415 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAGA CCCCACCCCC GCTTTCCGAC GACGAGCTTC GCGCACTGGA AGAGGAATAC
GATCCCGAGG CGCGTTTCCG CACCGTGACG CGCCCGATCG CCATCCTGTC CGGGGTCGTC
CTGTTCCTGC TCTCGGTCTA TCACTTCTAC ACGGCCGGCT TCGGCATCCC GCGCGCCACC
ACGCATCGCG GGCTGCATAT GGGCGTGTCG CTGTTCATCG TCTATCTCAG CTTTTCCTCG
CTGGCGCGCA ACCGCCACAA GACGGACGGC TTCGCCGTCC TGGGCGTGCC GGTAACGGAC
TGGATGCTCG CCATCGGCGG CGCTGTCAGC GCCTTCTATG TGCCATGGAT CTATAGCCAG
CTGGCCTTCC GCGTCGGCAA TCCGCTGCCC ATCGACATCG TCATGGGCAC CGTGCTGCTG
GTGGCGCTGA TGGAGGCGGT GCGCCGCTCG ATGGGCTGGC CGCTGCCGGT CATCGCAGCG
CTGTTCATCG CCTATGCCTA TTTCGGCAAG TCGATGCCGG GCATCCTGGT GCATCCCGGC
GCGGACTGGG CCAATATCGT CAACCACCTC TACCTGACCT CGCAGGGCAT CTACGGCACC
GCGCTCGGCG TGATCGCGAC CTATGTGTTC CACTTCGTGC TGTTCGGGGT GATGGCGCAG
AAGATCGGGC TGGGGCAGCT GTTCATCGAC CTGGCCACCG CGCTGGCCGG CCGTTTCGCC
GGCGGGCCGG CCAAGGTCTC GGTGGTTTCC TCGGCCATGC TTGGCACGAT CTCGGGCTCG
TCCATCGCCA ATACCGTGAC CACCGGCGCC CTGACCATCC CGGCCATGAT CAAGATCGGC
TTCAAGCGCC ACTTCGCCGC CGCGGTCGAG GCCGCCTCCT CGACCGGCGG GCAGATCACG
CCGCCGGTGA TGGGCGCGGT CGCCTTCCTG ATGGTCGAGT ATCTGGGCAT CCCGCTGCGC
ACCATCCTGA TCGCGGCCGT CGTCCCGGCC TTCATGCATT TCTTCGGCGT GCTGGTCCAG
GTGCACCTGG AGGCCAAGCG CCTGGGCATC CGCGGGCTGC GCCAGGAAGA GCTGCCGAAA
GCCGCCAAAG TTTTGCGCGA GGGCTGGCTG TCGGTCTTTC CGCTGATCCT GCTGGTCTGG
ATGCTGATGT CGGGCCGCAC GCCCTTCCTG TCGGCCTTCT GGGCCATCGC CGCCTGCATG
GTCGTCTACC TGATCCAGCG GGTCATGGCG GCCGGTGCCA TCGAGGGCAT CAAGGAAACC
GCCGCCGGCA TCTATGAAGG CTTCGTCGCG GGCGCCCGGC AATCGCTGGC CGTGACCGCG
GCCGCGGCGC TTGTCGGCGT GGTGATCGGC GTCGTCACCC TGACCGGTGT CGGCTTCAAG
ATCGCCTTCA TGGTGACCAG CGTGGCGCAG GACTGGGCCA CCTCCTTCCA TGGGGTGCTG
GCGGTGCTGC CGTTCGAACT GTTCACCATC CAGACGCTGA CGCTGCTGTT CACGCTGCTG
ATGACCGCGG TCGTCTGCGT GCTGATGGGA TGCGGCGTGC CGACGACAGC GAATTACATC
ATCATGGTGG CCGTGGCCGC GCCGGTCCTG GGCATGATGA ACGTCGAGCC GCTGGTGGCG
CATTTCTTCG TGTTCTATTT CGGCGTGCTG GCCGACGTGA CCCCGCCGGT CGCCCTGGCG
GCCTATGCGG GCGCCGGGAT CGCGGGGGCC AACGGCTTCA AGGCCGGGAA CACGGCCTTC
CGGCTGTCGA TGGGCAAGGC GCTGGTGCCT TTCGTCTTCG TCTTCTCGCC CTCGCTCCTG
CTGGTCACGC AGTCCTTCAC CCTGCCCGAC TTCCTGCTGG CCTTTGCAGG CGCGGTGCTG
GGCATCGTGG CGCTGTCGGC GGCGATCACC AACTGGCTGC TGGGGCCGCT GCTGCTGGTC
GAACGGATGC TGCTGCCCGC CGCGGCGCTG ATGATGATCG CGCCGGAGCT CGTCTCGACC
CTGATCGGCG CGACGATCCT CGGCGTGGTG CTGCTGCGGC AATATCTCGC GGGGCGCTCC
GGCCCCACCC CTGAGCCGGC CACATAA
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| Protein sequence | MTETPPPLSD DELRALEEEY DPEARFRTVT RPIAILSGVV LFLLSVYHFY TAGFGIPRAT
THRGLHMGVS LFIVYLSFSS LARNRHKTDG FAVLGVPVTD WMLAIGGAVS AFYVPWIYSQ
LAFRVGNPLP IDIVMGTVLL VALMEAVRRS MGWPLPVIAA LFIAYAYFGK SMPGILVHPG
ADWANIVNHL YLTSQGIYGT ALGVIATYVF HFVLFGVMAQ KIGLGQLFID LATALAGRFA
GGPAKVSVVS SAMLGTISGS SIANTVTTGA LTIPAMIKIG FKRHFAAAVE AASSTGGQIT
PPVMGAVAFL MVEYLGIPLR TILIAAVVPA FMHFFGVLVQ VHLEAKRLGI RGLRQEELPK
AAKVLREGWL SVFPLILLVW MLMSGRTPFL SAFWAIAACM VVYLIQRVMA AGAIEGIKET
AAGIYEGFVA GARQSLAVTA AAALVGVVIG VVTLTGVGFK IAFMVTSVAQ DWATSFHGVL
AVLPFELFTI QTLTLLFTLL MTAVVCVLMG CGVPTTANYI IMVAVAAPVL GMMNVEPLVA
HFFVFYFGVL ADVTPPVALA AYAGAGIAGA NGFKAGNTAF RLSMGKALVP FVFVFSPSLL
LVTQSFTLPD FLLAFAGAVL GIVALSAAIT NWLLGPLLLV ERMLLPAAAL MMIAPELVST
LIGATILGVV LLRQYLAGRS GPTPEPAT
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