| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0183 |
|---|
| Symbol | |
|---|
| ID | 4578821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 165932 |
|---|
| End bp | 167233 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639767500 |
|---|
| Product | D-amino acid dehydrogenase small subunit |
|---|
| Protein accession | YP_913995 |
|---|
| Protein GI | 119382939 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.618165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAATA TCGCCGTCAT CGGCGCCGGG ATCACCGGCG TGACCACCGC CTATGAACTG
GCCGCACGCG GCTTTGCCGT CACCGTCTAT GACCGCAACC GCTATGCCGC GATGGAGACC
AGCTTCGCCA ATGGCGGGCA GCTGTCGGCC TCGAATGCCG AGGTCTGGAA CTATCCGGCC
ACCATCGCCA AGGGCCTGAC CTGGCTCATG AAACCCGACG CGCCCCTGTC GCTGAGCCTG
AAGCCGGGTT GGCACAAATA CAGCTGGCTG GCGCAATTCC TGGGCAATAT TCCCAATTAC
CGCGCCAATA CCACCCGCAC CGCCGAACTG GCCGTGGCCG CGCGTCAGCG GATGCGCGAC
ATCGCCGCGC GCGAGGGCAT CGCGTTTGAC CGCGACGACC GCGGCATCCT GCATTTCTAC
GCGACCGAGG CGCAGATGGC CCATGCCCGC CGCGTCTCGG AGCTGCTGGC CGCCGGCGGG
GTCGAGCGGG TCGAGCTGGA CGCCGAGGGC ATCCGACGGC TGGAGCCGCG CCTGAAGGGC
GATTTCATCG GCGGCTTTCA CACGCCGGGC GACGCGACCG GCGACATCCA CCTGTTCACC
ACCGGCCTTG CCCGCGCCTC GGCCCGGCTT GGCGTCACCT ACCGGATGGA GACCGAGATC
CTGTCCTGCC GCCATGACGG CACCGACACC CATATCCGCT ATCGCGACGC CGAGGGCCAG
GTTCGCCATG CCATCCATCC CGCGATCGTG GTCTGCGCCG GCATCGGCAG CCGGGCCATC
GCGCGCGGCC TTGGCGATCG CGTCAACATC TATCCGGTCA AGGGCTATTC GATCACCGTG
AACCTGGAGG ACGACATCTC GGTCCAGGCG GCCCCGGAGC TGAGCCTGTT GGACGATGCC
GCCAAGATCG TCACCAGCCG CCTTGGCCGC GCGCGCTTCC GGGTCGCCGG CACCGCCGAA
TTCGCGGGCG AGAACCGCGA CATCCGCGCC TGTCGGATCC GCCCGCTGGT CGAATGGGTG
AACCGGCATT TCCCCGCCGT CTCGACCCGG CAATGCGTGC CCTGGGCGGG GCTGCGGCCG
ATGACGCCCT CGATGATGCC CAAGGTCGGG CCGGGCCGCC GCGCCGGGGT GTTCTACAAT
ACCGGCCACG GGCATCTCGG CTGGACCCTG TCCGCCGCCA CCGCCGATCT GGTCGCGCAA
TCGGTCGAAG CGCAGCTGCG CCGCCCCGGC GCCGTGATGC CACTCACGGC AGAGAACATG
CCGCCTGCCC GCGCGGCCCT TGTGGGCGCA AGCGACCGAT GA
|
|---|
| Protein sequence | MQNIAVIGAG ITGVTTAYEL AARGFAVTVY DRNRYAAMET SFANGGQLSA SNAEVWNYPA
TIAKGLTWLM KPDAPLSLSL KPGWHKYSWL AQFLGNIPNY RANTTRTAEL AVAARQRMRD
IAAREGIAFD RDDRGILHFY ATEAQMAHAR RVSELLAAGG VERVELDAEG IRRLEPRLKG
DFIGGFHTPG DATGDIHLFT TGLARASARL GVTYRMETEI LSCRHDGTDT HIRYRDAEGQ
VRHAIHPAIV VCAGIGSRAI ARGLGDRVNI YPVKGYSITV NLEDDISVQA APELSLLDDA
AKIVTSRLGR ARFRVAGTAE FAGENRDIRA CRIRPLVEWV NRHFPAVSTR QCVPWAGLRP
MTPSMMPKVG PGRRAGVFYN TGHGHLGWTL SAATADLVAQ SVEAQLRRPG AVMPLTAENM
PPARAALVGA SDR
|
|---|
| |