| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0132 |
|---|
| Symbol | |
|---|
| ID | 4579511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 117381 |
|---|
| End bp | 118250 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639767450 |
|---|
| Product | putative replication protein A |
|---|
| Protein accession | YP_913945 |
|---|
| Protein GI | 119382889 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5534] Plasmid replication initiator protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.303306 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.685684 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTTCCC CCATTTCCGC GCGCCGCATC TGCGGCGGCC GGCAGATGGA ACTGTTCCGG
CCGGTCGCCA GCGACATTGC CGCCCGCGAT TCCCGCGATC TGATGTCCTG GCCGTTCTTT
TCGTTGGCCA AGTCCCGCCG CGTTGTGCCG ATCGATTTCC ACATGGGGCC GGTGTCGATC
CGCGTGGAGG CGACGCCGGA ACATGGCATG GCCACGATCT GGGATGCCGA CATCCTGATC
TGGGCGGCCA GCCAGATCGT CGAGGCCCGC AACCAGGGCT TGCGGACCTC GCGTCTGATG
GCCGCGACGC CCTACGAGAT CCTCACCTTC ATCCGGCGCG GCGATTCCGC CCGCAGCTAC
CTGCGGCTCA AGGCCGCCCT CGACCGCTTG CAATCGACGA CGGTCGCCAC CTCGATCCGC
CAGCCGGCGG AACGGCGGCG GCACCGGTTT TCCTGGATCA ACGAATGGAA GGAACTGCTC
GACGATCAAC GCAGGCCGCT CGGGATCGAA CTGATCCTGC CCGACTGGTT CTATGCCGGG
GTGATGGACG ATGCGCTGGT CCTGACCATC GACCGCGCTT ATTTCGACCT CAAGGGCGGG
CTGGAGCGCT GGCTCTACCG TCTGGTGCGC CGCCACGGCG GCCGCCAGCC CGGTGGCTGG
AGTTTCGATC TCCGGCACCT GCACCTGAAA TCCGGCAGCC TGTCGCCCTT TAAGCGCTTC
GCCTTCGAAG TCCGGGCCAT CGTCCAAAGA CAGCCGCTGC CCGGCTATCG CCTGTCGCTG
GCCGTCGGTT CCGACGGGCT GCCGCGGCTG TGTTTCCAAC CAGCCCCCGC CAATCCCTTC
GCCGCCGCGC CTCGCGCCGC GCGTCGGTGA
|
|---|
| Protein sequence | MSSPISARRI CGGRQMELFR PVASDIAARD SRDLMSWPFF SLAKSRRVVP IDFHMGPVSI
RVEATPEHGM ATIWDADILI WAASQIVEAR NQGLRTSRLM AATPYEILTF IRRGDSARSY
LRLKAALDRL QSTTVATSIR QPAERRRHRF SWINEWKELL DDQRRPLGIE LILPDWFYAG
VMDDALVLTI DRAYFDLKGG LERWLYRLVR RHGGRQPGGW SFDLRHLHLK SGSLSPFKRF
AFEVRAIVQR QPLPGYRLSL AVGSDGLPRL CFQPAPANPF AAAPRAARR
|
|---|
| |