| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0048 |
|---|
| Symbol | |
|---|
| ID | 4579079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 39505 |
|---|
| End bp | 41481 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639767359 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_913861 |
|---|
| Protein GI | 119382805 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.760787 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAACG CTGAGGCGGC CCAGGCCGGT TTGCAGTCGA TTCCAGCGTT GCTGGCGCGC
AATGCCGAAC GCTTCGGCGA CCGGCCGGCC TATCGGGAAA AGGAATTCGG GATCTGGCAA
AGCTGGACCT GGGCCGAGGC CGCGACCGAG ATCCGCGACC TGGCGCTGGG CTTTCTGGTG
CTGGGCCTGA ACCGGGGCGA TCATGTCGCC ATCATCGGCC GCAACCGCCC GGCGCATTAC
TGGGCGATGG TCGCGGCGCA GATGTGCGGC GCGGTGCCGG TGCCGCTGTA TCAGGACGCG
GTGGCCGAAG AGATGGCCTA TGTGCTGGAC CATTGCGGCG CGCGCTTCGT CGTCTGTGGC
GACCAGGAAC AGGTGGACAA GGTGCTGGAG GTGGGCGACC GCGCCCCTTC GGTCCAGCAT
CTCGTCTATA CCGACAAGCG CGGAATGCGG AAATACGACC ATGCCCGCAT GAACGCGCTG
GCCGATGTGC AGGCCGAGGG CCGCGCGGCC CAGCAGCGGC TGGGCCATGA ACTGGACGAG
CGCATTGCCG AGCTGGGCTA CGACGACACC TGCGTGATGC TGTATACTTC GGGCACTACC
GGCAAGCCCA AGGGCGTGGT GCTGTCTAAC CGCAACATCA TCGAGACCGG CAAGAACACC
GCCTCCTTCG ACCAGCTGAC CGCGCGCGAG GAGGTGCTGG CCTATCTGCC GATGGCCTGG
GTCGGCGACT TCATCTTTTC GGTCGGGCAG GCCTATTGGG CCGGCTTCAC CGTGAACTGC
CCCGAGGGCG CGCATACGAT GATGACCGAC CTGCGCGAGA TCGGGCCGAC CTATTTCTTC
GCCCCGCCGC GCGTCTTCGA AGGCCAGCTG ACCTCGGTGA TGATCCGCAT GGAGGATGCC
AGCCGCATCA AGCGCCGGCT GTTCAAGCAC TATATGGAGA TCGCCCGCCG CATCGGACCG
GCGCTTCTGG ACGGCAAGCC GGTCGGGGCG CTGGACCGGC TGCGCTACAT GCTGGGCAAC
CTGCTGGTCT ATGGCCCGCT GAAGAACACG CTGGGCTATT CGCGCATCCG CGTCGGCTAT
ACCGCGGGCG AGGCGATCGG GCCCGAGATC TTTGATTTCT ATCGCAGCCT CGGCATCAAC
CTGAAACAGC TCTACGGCCA GACCGAGGCC AGCGTCTTCA TCACCCAGCA GCCGGACGGG
CAAGTGCGCT CGGATACGGT GGGCGTGCCG TCCCCGGGGG TCGAACTGAA GATCGCCGAG
AACGGCGAGG TCTTCTATCG CTCGCCCGGC ACCTTCGTCG AATATTACAA CAACCCCGAC
AGCACCGCCT CGACCAAGGA TGCCGAGGGC TGGGTGGCGA CGGGCGACGC CGGCTTCTTC
GAGGAAGAGT CGGGCCACCT GCGCATCATC GACCGTGCCA AGGACGTGGG CCGCATGGCC
GACGGCCGGA TGTTCGCGCC GAAATATGTC GAGAACAAGC TGAAGTTCTA TCCCAACATC
CTGGAGGCGG TGGTCTTCGG CGCCGGCCGC GACATGTGCA CCGCCTTCGT CAACATCGAC
CTGACCGCGG TCGGCAACTG GGCCGAGCGC AACAACATCG CCTATGCCAG CTATCAGGAA
CTGGCCGGCC ATCCGCAGGT CTATGCGACG ATCAAGGAAC ATGTCGAGGC GGTGAACGAA
TCCGTCGCCC AGGACCCGAT GCTGTCGGGC TGCCAGATCA GCCGCTTCCT GGTGCTGCAC
AAGGAGCTTG ATCCCGACGA CGGCGAGATG ACCCGCACGC GCAAGGTGCG CCGCAACATC
ATCGCCGAGA AATATGCCGA CCTGATCGAG GCGCTCTATG ACGGCCGCGA CACGGTCAGC
ACCCGCACCG AGGTGACCTA TGAGGACGGC CGCAAGGGCG AGATCCGCGC GACCCTGAAG
ATCGAGGACG CCCGGACCTT CCCGACCCGG ACCATGCAGA AGGTGGCCGC GGAATGA
|
|---|
| Protein sequence | MQNAEAAQAG LQSIPALLAR NAERFGDRPA YREKEFGIWQ SWTWAEAATE IRDLALGFLV
LGLNRGDHVA IIGRNRPAHY WAMVAAQMCG AVPVPLYQDA VAEEMAYVLD HCGARFVVCG
DQEQVDKVLE VGDRAPSVQH LVYTDKRGMR KYDHARMNAL ADVQAEGRAA QQRLGHELDE
RIAELGYDDT CVMLYTSGTT GKPKGVVLSN RNIIETGKNT ASFDQLTARE EVLAYLPMAW
VGDFIFSVGQ AYWAGFTVNC PEGAHTMMTD LREIGPTYFF APPRVFEGQL TSVMIRMEDA
SRIKRRLFKH YMEIARRIGP ALLDGKPVGA LDRLRYMLGN LLVYGPLKNT LGYSRIRVGY
TAGEAIGPEI FDFYRSLGIN LKQLYGQTEA SVFITQQPDG QVRSDTVGVP SPGVELKIAE
NGEVFYRSPG TFVEYYNNPD STASTKDAEG WVATGDAGFF EEESGHLRII DRAKDVGRMA
DGRMFAPKYV ENKLKFYPNI LEAVVFGAGR DMCTAFVNID LTAVGNWAER NNIAYASYQE
LAGHPQVYAT IKEHVEAVNE SVAQDPMLSG CQISRFLVLH KELDPDDGEM TRTRKVRRNI
IAEKYADLIE ALYDGRDTVS TRTEVTYEDG RKGEIRATLK IEDARTFPTR TMQKVAAE
|
|---|
| |