Gene Cpha266_1085 details

Gene Information

• Locus tag: Cpha266_1085
• ID: 4570029
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium phaeobacteroides DSM 266
• Kingdom: Bacteria
• Replicon accession: NC_008639
• Strand: -
• Start bp: 1226746
• End bp: 1228695
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 639765682
• Product: alpha-amylase family protein
• Protein accession: YP_911550
• Protein GI: 119356906
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0151666
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACAAA ACAGCACACC ACATCAAACA ACAAACCTTA AGCTCGTTCT TCATGCATTG 
GAGCAACTGC CTGAACTGAA ACCCGGCCAG CCATATTACA TTCCCGGACT CTGGAATGGG 
GGTGATAGTG GTTTTGAACC GGTTCAGCCG GGAAAATACT TTGCCGATAT CATTACGAAC 
ATGTTATCGG GCAACGCAAA CGAAATCCGC AACCCTTTGC AATCTTCAGG GAACTGGACG 
CCGGATGCTG TCGTGTATAA CCTGTTTATA CGGCTCACCA CTGCATATGA TCACAATAAT 
GATGGCATTG TCAATACCGA ACCTCTTGAA AATGGCTTCA GGGAAACAGG AACGCTCCTC 
AAGGCAACAG GCCTGTTACC CTACATTAAA AAACTCGGTG TCAACACGCT TTACCTCCTT 
CCGGTTACGT TGACCGGATC CGATGATAAA AAAGGCTCCC TCGGCTCCCC TTACGCAGTA 
AAAGACCCTT TTGCCATAGA CCCTATGCTC GACGAACCGG CTCTCGGGCT TTCGGCTGAC 
ATCCTCCTGA AAGCGTTTGT CGAAGCCGCT CATCTGCTCA ACATGCGTGT TCTTTTTGAG 
TTCGTCTTTC GAACAGCATC AGTTGACAGC AACTGGATTC AGGATCATCC GGACTGGTTT 
TACTGGATTT CAGAGACTGG GTGCGCAACG AAGTATGGTC CGCCGCACTT CAGCGATGAA 
ATCCTTCACA CCATTTATGA AAAGGTCGAC AAGCATGACC TGAACAATCT GCCGGCTCCG 
GAAGCCGATT ACAAAAAAAT GTTTACCTCC GTTCCTGTCG CCATCCACAA GAAGGATGAA 
AAACTCAGAG GAATCACAAA ACAGGGAGAA GAGTGCAGAA TTGCCAGCGC ATTTTCAGAC 
TGGCCGCCGG ATGACAGGCA GCCGCCATGG ACCGACGTAA CCTATCTGAA AATGCACAAC 
CATCCGGAAT TCAACTATAT CGCGTACAAC ACCATCCGGA TGTATGACGT TGCTCTCGAT 
AATCCCGAAT ACCGGAATAA TCTCCTCTGG GAAACAATAG AAGCGATCAT CCCCCATTTT 
CAGGAGAACT ATTGCATTGA CGGCGCAATG ATCGACATGG GGCATGCGCT GCCATCAGCA 
CTCAAACACT CCATCGTCAA ACGTGCGCGA CGCAACAATC CGAATTTCGC ATTCTGGGAT 
GAAAATTTTG ACCCGACGCC ATCCGTCAGG GATGAAGGGT TCAATGCCGT ATTCGGCTCC 
CTTCCCTTTG TTATTCACGA TCCTGTTTTT ATACGAGGAT TGCTCAATTA TCTCAATAAA 
ACCGGTGTAG CACTTCCTTT TTTTGGTACG GGAGAAAACC ACAACACTCC GAGAGTATGT 
CACGGCTATC CCGGTATGGA AACTGGCAGA AACAGGTCTT CCTTCATTTT CACCCTCTGC 
TGTATTCTGC CGGCAATCCC GTTTCTACAC TCAGGCATGG AGCTCTGTGA ATGGCATCCG 
GTTAATCTCG GACTGAACTT CACCGCTGAA GACAGGGAAC GCTTTCCGTC AGACAAGCTC 
CCGCTTTTCA GTGCGTTCAG TTACGATTGG AAAACAGCCA ACGGCCTTAA GACTCTCAAC 
AGCTACATCA GCAAGATCCT GTCCATAAGA GCCAACTATC GTGAACTTGT TCAGTGTATG 
GATAAGGGTT CAATGATTCT TCCCTACATC ACCAATCCTG AACTTTTGGC CGTCATGAGA 
AAAAACGGCG ACACAACGCT GCTCTTCATT GGAAACAGCA ATGGATCTGA AGCGCAGAAT 
GGCATCATTG AATTCGGCAT CACTGACGCA ATCCTCTTTG ATCTTATCGA AGAAAAAGAG 
TACCCTGTTT CAAATCACTC CCTGAGCTTG CATTTCAAGC CGGGTCAAAG TATGCTTTTC 
GAACTTCCTG TAGAGGAAAA ACCATCGTAG 

 

Protein sequence

MKQNSTPHQT TNLKLVLHAL EQLPELKPGQ PYYIPGLWNG GDSGFEPVQP GKYFADIITN 
MLSGNANEIR NPLQSSGNWT PDAVVYNLFI RLTTAYDHNN DGIVNTEPLE NGFRETGTLL 
KATGLLPYIK KLGVNTLYLL PVTLTGSDDK KGSLGSPYAV KDPFAIDPML DEPALGLSAD 
ILLKAFVEAA HLLNMRVLFE FVFRTASVDS NWIQDHPDWF YWISETGCAT KYGPPHFSDE 
ILHTIYEKVD KHDLNNLPAP EADYKKMFTS VPVAIHKKDE KLRGITKQGE ECRIASAFSD 
WPPDDRQPPW TDVTYLKMHN HPEFNYIAYN TIRMYDVALD NPEYRNNLLW ETIEAIIPHF 
QENYCIDGAM IDMGHALPSA LKHSIVKRAR RNNPNFAFWD ENFDPTPSVR DEGFNAVFGS 
LPFVIHDPVF IRGLLNYLNK TGVALPFFGT GENHNTPRVC HGYPGMETGR NRSSFIFTLC 
CILPAIPFLH SGMELCEWHP VNLGLNFTAE DRERFPSDKL PLFSAFSYDW KTANGLKTLN 
SYISKILSIR ANYRELVQCM DKGSMILPYI TNPELLAVMR KNGDTTLLFI GNSNGSEAQN 
GIIEFGITDA ILFDLIEEKE YPVSNHSLSL HFKPGQSMLF ELPVEEKPS