| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpha266_0878 |
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| Symbol | |
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| ID | 4570472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides DSM 266 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008639 |
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| Strand | - |
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| Start bp | 999908 |
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| End bp | 1003291 |
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| Gene Length | 3384 bp |
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| Protein Length | 1127 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639765473 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_911350 |
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| Protein GI | 119356706 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGAAA CAGCCTTTTG CCGTATCGCC CGAATCAAGC ATGAAAATAT GTTTTGTCAG
CTTCATATGA AAACGTTATC CGCATCTACC TCCCCGGCAA CCGCCGTTTT GAAAAGAAAT
CCCTCCATGC TTTTCAGAGA GCTGCAACAG TCCGGGGCAT ATATTCACCT TAAAAAAAGG
ATTGAAGAGT CGATCTCCTC TACAGGTGCG CTTATCCCTG TTGAGGTTAC TGGTCTCAAG
GGTTCGCTTT CATCGGTTCT TGCCTGCACG CTTTTCAGTG AGTCAGACTG CCCGGTTCTG
GTAGTCTCCG GTCAAACCAG CTTTGAAAAG TATGAAAATG ATCTTGGCGG ACTGCTGCCT
CATGCGCCAG TCCATACCTT TTCGGATGAA CTTCCTCTCG CGCTCGTTGC CCTTGTGCAG
AAAAAAAATC CATTGATACT CTCCTCTTTC GACGATCTTT TACTGCCGCT CTCTTCGCCT
TCCGAAGCAC TGGAAAAACT CTTCACCCTT GCCGTTGAAA AAGAAGCCGG TTATGAAAAG
CTGCTGTCGT TTCTTGCTGA AAACGGTTTT GAACCGCGTG AGTTTGTTGA GGACGAGGGA
GAATTTTCTG TGCGCGGGTC AATAGTCGAT GTCTTTTCAT TCGGAGCCAA GGTACCGTTG
AGAATCGAAT TTTTCGGCAA CACCGTTTCT TCCCTCCGTA CTTTTGACAT CAACAGCCAG
CTTTCGCAAA AAACGCTCAC CGCTGCTGAG TTGACCGGCA ATTTCAATCC TGCGGAGAGC
TCGAAGGCTT CAGCAGAAAT CGTCCTTGCC GATTATCTTC CGCTATCAAC GATTATTATT
ATTGATGACT GCACCGAGTT ATCGGCTTTC GAAAATGCCT GTTCACTCGA AGCAGCGCTC
TCCGGTTTCA GACAAATAAA AATAAAACCG GCATCCGGCA TCGCCATAGA TTTTCACTCC
TCGGCCCAGG AAAAATATAA TGCCAACTTC CGTCTTTTGG CATCGCGTCT GCAAAAGGAG
TCGGATTCAG GCCGTCGAAC GGTTTTTGCC GCAAGTTCAC GCCGCGAAAT CGAGGAACTT
GCCGATTTCA TTGCCGAGGA AATTCATGGC GCTGAAACCG AACAAACCAT TGAAGCCGAC
TGGATACCGG TCACCCTCTA TACCGGATTT ACCTTCGGCG ATCTGGATCT CTACACCGAA
TCGGATATTT TCGGCAAATT TCATACTCCA AAAGGTCATC ACAAAAGGAA AATCAAGGGT
ATATCTCTCA AAGATCTCCA AAAACTCAAG GTGGGCGACT ATGTGGTTCA CGAAAATTAT
GGTATCGGAC GGTTCAAAAC ACTTGAAACC ATATCAGTAG GAAACTCTGA GCAGGAGTGT
GTTCTTGTCG AATATGAAGG GGGTGACCAA CTTTTTGTCA ACGTTCAGAA TATCAATCTT
CTTTCGAAAT ATACCGCATC AGAGGGCTCG CTTCCGTCAC TATCAAAACT CGGAAGCTCA
AAATGGGGTG CAAAAAAGGA CAAGGTTCGC CGAAAGCTCA GAGACATTGC CATTAACCTG
ATAAAAATCT ATGCGAAACG CAAGATGACA GAGGGATTTG CCTGTTGTGC CGATACCATT
TTCACCCGCG AATTCGAGGC ATCGTTTGTG TTTGATGAAA CGCCAGACCA GCTCAAGGCA
ATCGAAGAGG TTAAAAAAGA TATGCAGGCG TCCCATCCGA TGGACAGACT TATCTGCGGG
GATGCCGGGT TTGGAAAAAC CGAAATCGCC ATGAGAGCTG CGTTCAAAGC GGTAGAGTCT
AAAAAACAGG TTGCCATTCT GACGCCGACA ACCATTCTTG CTCATCAACA TGGCGAATCG
TTTACCCGGA GATTCGAGAA TTTTCCGATA TCGATCGCAG TACTCAGCAG ATTTGTGGCT
CGTAAGGATC AGGAAAAAAT TATCGAAAAA ATCAAAGCCG GTCAGATCGA TATTGTCATC
GGAACACATC GGCTTGTCTC CAAAGATGTG CTGTTCAAGG ATCTCGGACT TCTTGTCATT
GACGAAGAAC AGCATTTTGG CGTTGAAGTC AAGGAAAAAC TTCGCGACTC CTTTCCCGGT
GTTGACAGCC TGACCATGTC GGCCACCCCG ATACCAAGAA CCCTGCAATT TTCAATGCTT
GGCGCAAGAG ATCTTTCGAT TGTCTCAACC CCTCCTAAAA ACCGTCAGCC GGTTGAAACC
ATACTTACAG GGTACGACCC TACCATTATC CAGTCTGCCA TCCGTCATGA GCTGCAACGG
GATGGACAGG TTTTTTTCCT GCATAACCGC ATTTCGGGTC TCGAAGAGGT GCAACAAACT
CTCAGGGATC TGGTGCCATA TGCAAGAATC GTTATCGCGC ATGGTCAAAT GCCGTCGAAA
GAGCTCGAAA AGGTTATGAT GGACTTCATG CAGAAAGAAA TTGATGTCCT TATTTCTACT
TCGATTATAA GCTCCGGGCT GGATATTTCA AATGCAAACA CCATTATCAT CAACCGGGCT
GACATGTTCG GCCTTTCCGA TCTGTACCAG TTACGGGGAA GAGTCGGAAG AAGTGAGCGA
AAAGCCTCGT GTTATATGAT TACGCCCCCT TTGAATACTC TGAAAAAAGA GGCTGTGCAG
CGGCTTGCTG TTATTGAGAG CTTTACTGAG CTTGGATCGG GCTTCACCAT AGCGTTAAGG
GATCTTGACA TCCGGGGCGC AGGCAACCTT CTTGGCGCAG AACAATCCGG GTTTATCCAT
GAACTCGGCT TCGACCTCTA CCAGAAAATG CTTGAAGAGA CCGTTGCTGA ACTTAAATCA
ACTGAGTTTT ACCAACTTTT CTCAAATGAG GAGAGTCCTG CTGTGTTGCC GTCAAAACCA
TGCGATCTGG CCTTTTTCTT CGATGCCCTT ATTCCGGATT TCTACATCAG CGCTATTCAC
GAACGCTTTG CTTTTTATGA AAAAATTTCC CGGGCGACGT CAGAAGAGGT TCTTGATTCT
TTTCACAGTG AGATGAAAGA CCGTTTCGGA GAACTTCCTG AGGAAGTTGC AAATCTTCTT
TTGCTGGCAA AGCTGAAAAT CGCAGCTTCA GCCGCAGGTA TCGATAAAAT CGATATACAG
CCTGAAACCT TTACGATGTT TCTCCCCGAC CAGACAAATG AAACGATTGC CAACAGTACT
TTTTTTCACT ATCTCTTTCT CGCTGTTCAG GAGCCCTGGA TGCAAGACTA CAAACCGGGA
TTCAAAGCTG ATAAAAAAAT GAAACTTGTT CTTCGCCATC CAAAAGAGAG TGATAAAACT
CCTGCCGTAC TGCTCCGGAA GTACCGGGAT CTGCTGAAAA AACTGGAACA AAGATCGAAA
GAAACCGAAA ACGCTCCGGC TTGA
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| Protein sequence | MDETAFCRIA RIKHENMFCQ LHMKTLSAST SPATAVLKRN PSMLFRELQQ SGAYIHLKKR
IEESISSTGA LIPVEVTGLK GSLSSVLACT LFSESDCPVL VVSGQTSFEK YENDLGGLLP
HAPVHTFSDE LPLALVALVQ KKNPLILSSF DDLLLPLSSP SEALEKLFTL AVEKEAGYEK
LLSFLAENGF EPREFVEDEG EFSVRGSIVD VFSFGAKVPL RIEFFGNTVS SLRTFDINSQ
LSQKTLTAAE LTGNFNPAES SKASAEIVLA DYLPLSTIII IDDCTELSAF ENACSLEAAL
SGFRQIKIKP ASGIAIDFHS SAQEKYNANF RLLASRLQKE SDSGRRTVFA ASSRREIEEL
ADFIAEEIHG AETEQTIEAD WIPVTLYTGF TFGDLDLYTE SDIFGKFHTP KGHHKRKIKG
ISLKDLQKLK VGDYVVHENY GIGRFKTLET ISVGNSEQEC VLVEYEGGDQ LFVNVQNINL
LSKYTASEGS LPSLSKLGSS KWGAKKDKVR RKLRDIAINL IKIYAKRKMT EGFACCADTI
FTREFEASFV FDETPDQLKA IEEVKKDMQA SHPMDRLICG DAGFGKTEIA MRAAFKAVES
KKQVAILTPT TILAHQHGES FTRRFENFPI SIAVLSRFVA RKDQEKIIEK IKAGQIDIVI
GTHRLVSKDV LFKDLGLLVI DEEQHFGVEV KEKLRDSFPG VDSLTMSATP IPRTLQFSML
GARDLSIVST PPKNRQPVET ILTGYDPTII QSAIRHELQR DGQVFFLHNR ISGLEEVQQT
LRDLVPYARI VIAHGQMPSK ELEKVMMDFM QKEIDVLIST SIISSGLDIS NANTIIINRA
DMFGLSDLYQ LRGRVGRSER KASCYMITPP LNTLKKEAVQ RLAVIESFTE LGSGFTIALR
DLDIRGAGNL LGAEQSGFIH ELGFDLYQKM LEETVAELKS TEFYQLFSNE ESPAVLPSKP
CDLAFFFDAL IPDFYISAIH ERFAFYEKIS RATSEEVLDS FHSEMKDRFG ELPEEVANLL
LLAKLKIAAS AAGIDKIDIQ PETFTMFLPD QTNETIANST FFHYLFLAVQ EPWMQDYKPG
FKADKKMKLV LRHPKESDKT PAVLLRKYRD LLKKLEQRSK ETENAPA
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