| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_2368 |
|---|
| Symbol | |
|---|
| ID | 4573131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 2561405 |
|---|
| End bp | 2562748 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639756418 |
|---|
| Product | HlyD family type I secretion membrane fusion protein |
|---|
| Protein accession | YP_902032 |
|---|
| Protein GI | 118580782 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATCA GGCAGAGAAT GGCAGCCTTC GGCGATGTGC TCAGCCGCTT CAAAACGATT
TTCAGCCATT GCTGGCGCAA CCGCCATCAG CTCGAGGGTA AAGTGCTGGC TGCCCAGGAA
GCCGAGTTCC TGCCGGCAGC CCTGTCCCTG CAGGAAAAGC CGGTTTCGCC GGTCGCACGC
CTGCTGGCAA AGGTTCTGAT GGCACTGGTG GTTGTTCTGA TCACCTGGTC GATCGTGGGC
AAGATCGACA TCATCGTCAA TGCTTCAGGA AAGATCATTC CCAGCGGCTA CACCAAGACC
ATCGCCTGCG TGGACGTGGC CAGCGTGAGA GCCCTGTACG TTGCAGAGGG ACAGCAGGTC
AGGGCAGGAG ACCTGTTGAT AGAGCTGGAT GCCATCGCAT CCGATGCCGA GCGGGATAAG
GCGGCCGGGG ATCGCGCCGT GTCGATCCTC CAGGTTGCCT GCGCCAGGTC GCTGCTCGCG
GCAATCGACG GCGGCAGTCC ACCGCGGCTT CCTCCCATCG CCACTGTTCC GGCGGATCAA
TGGCTGGCCG CGAAACAGCA GCTTGATGCC CAGTACGGCG ATTATCAGGC CAGGCTGAAG
CGGATCGACG GCGACATCGA GCGCTTCAGC CTGGCGTTGC AGTTGGCCAC GCAACGCGCC
ACCGACTACA AGGCGCTTTT GAAAGATCGC GACGTCTCCT ACCACGCCTG GCTGGAGAAG
GAGCAGGCCC GCGTCGATCT CGCCGGCCAG TTGGCCGACG CCAGAAACCA GCGCAATGCC
CTGGTCGCCG AGACCAGGCG TGTGGCCCAT GAACAGTCCA CCGAGGGGAG TAAAACCGCG
GCGTCTTCTC AGCAGGACGC CATCCGCGCG GCCGCCCACA GCAGGCTCCT GAAACTCACC
GCGCCGGTTA GTGGTACGGT GCAGCAGTTG AACGTGCATA CCATCGGCGG TGTGGTTGCC
GCGGCCAGCC CCCTGATGCA GATCGTCCCC AGGGAGAGCC GGGTGGAGGT CGAGGCGTTC
ATGGAGAACA AGGATGTGGG CTTTGTCCAG GAGGGGCAGA GCGCCGAGGT CAAGATAGAT
GCCTTTGAAT ACACCAAATA CGGCACCATA AAGGGAAGAG TCACGCACGT TTCCCGCGAC
GCCATCGCCG ACGAGAAGCG GGGCCTGATC TATTCCACGA AGATCCGACT GGACAGATCC
TCCATCACTG TGGACGGCAG GGAGATGCCT CTGTCGGCCG GGATGACGGT CAACGTGGAG
ATCAAGACCG GCGACCGCCG CATCATCGAA TACGTCCTGA GCCCGCTTTT GCGCCACAAA
CGGGAAAGCC TCAATGAACG GTAG
|
|---|
| Protein sequence | MSIRQRMAAF GDVLSRFKTI FSHCWRNRHQ LEGKVLAAQE AEFLPAALSL QEKPVSPVAR
LLAKVLMALV VVLITWSIVG KIDIIVNASG KIIPSGYTKT IACVDVASVR ALYVAEGQQV
RAGDLLIELD AIASDAERDK AAGDRAVSIL QVACARSLLA AIDGGSPPRL PPIATVPADQ
WLAAKQQLDA QYGDYQARLK RIDGDIERFS LALQLATQRA TDYKALLKDR DVSYHAWLEK
EQARVDLAGQ LADARNQRNA LVAETRRVAH EQSTEGSKTA ASSQQDAIRA AAHSRLLKLT
APVSGTVQQL NVHTIGGVVA AASPLMQIVP RESRVEVEAF MENKDVGFVQ EGQSAEVKID
AFEYTKYGTI KGRVTHVSRD AIADEKRGLI YSTKIRLDRS SITVDGREMP LSAGMTVNVE
IKTGDRRIIE YVLSPLLRHK RESLNER
|
|---|
| |