Gene Ppro_0680 details

Gene Information

• Locus tag: Ppro_0680
• Symbol: rplC
• ID: 4571919
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter propionicus DSM 2379
• Kingdom: Bacteria
• Replicon accession: NC_008609
• Strand: +
• Start bp: 722679
• End bp: 723308
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 639754723
• Product: 50S ribosomal protein L3
• Protein accession: YP_900369
• Protein GI: 118579119
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.620206
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAG GTATTATCGG AAAAAAAATT GGAATGACAC AGATTTTTAC GGAGGATGGG 
ACTCGAGTTC CCGTTACCGT TATCCAGGCA GGTCCGTGTG TGGTTACGCA GAAGAAAACC 
GCCTCTATTG ATGGGTACAG CGCCGTTCAG GTTGGCTTTG ATTCCACGCC GGCTGCGAAC 
GCTTCGAAAC CGATGCTTGG CCATTGTACC AAGTCGGGCC AGGGGGTATT TAGGTATCTC 
AGGGAATTTA AATTTGATGC TGCGTCTGAA ATGAATCTTG GGGATGTGCT GACTGTTGAG 
CAGTTTACAG CAGGTGATTT TGTTGATGTG ACCGGCACAA GTATAGGCAA GGGGTTTCAG 
GGGGTTATTA AGAGATATAA CTTCAGGGGC GGCCGCGCAA GCCACGGTTC TCGCTTCCAT 
CGTGCCCCTG GTTCCATTGG AGCATCTGCC ACACCTTCAC GTGTTTTTAA GAATAAAAAG 
ATGCCCGGGC AGTTGGGTAA TACCCAGGTC ACCATGCAGT GTCTTCAGGT GATTCGCGTA 
GATGCAGATG ATAATCTACT TCTTATCAAG GGAGCCATAC CGGGCCATCG CAACAATATT 
GTTCTTATCA AAAACAGTGT AAAAGCTTAA 

 

Protein sequence

MKKGIIGKKI GMTQIFTEDG TRVPVTVIQA GPCVVTQKKT ASIDGYSAVQ VGFDSTPAAN 
ASKPMLGHCT KSGQGVFRYL REFKFDAASE MNLGDVLTVE QFTAGDFVDV TGTSIGKGFQ 
GVIKRYNFRG GRASHGSRFH RAPGSIGASA TPSRVFKNKK MPGQLGNTQV TMQCLQVIRV 
DADDNLLLIK GAIPGHRNNI VLIKNSVKA