Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acel_1882 |
Symbol | |
ID | 4486139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidothermus cellulolyticus 11B |
Kingdom | Bacteria |
Replicon accession | NC_008578 |
Strand | - |
Start bp | 2127448 |
End bp | 2129613 |
Gene Length | 2166 bp |
Protein Length | 721 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639730672 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_873640 |
Protein GI | 117929089 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.755669 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGAGGTGCA GTGTGACGGA CCCGGACTCT CCGCCGGATA AAGGCGGCCA GGAATCGTCG CATGACGACA CAGTGGGCGA CGAGGCTACG ACGGCCGCCC GGCCGGCGTC CCCGGAAGAC GTTGACGCCC ACCTGGTCAT CGACTCTCTG GTGGATGCTG TTCTCGTCGT CGCTCCCGAC GGTCGGATTG TGCTGGCGAA TTCGGCGGCT GAGAAACTCC TCGGTGCGGA ACCGGGAAGC CTGAGCGGCG CTCCCCTTCT TGACTTCGTT CCGCAGCGAT ATCAGCGCGC GCACTGCGCG GGATTCGAGC GTTACGTCCG AACCGGCGAA GGCCGGCTGC CGGCGGGCCA GGCGGTCGAC GTGGCAGCCA GACGCCGGGA CGGTGTGGAA ATTCCGGTTG AAATCCGATT CGGCCGGGCC GGGAAGCCGA CTCCGGAGGG CTTTTCGGTG GTCGGCGTCC TGCGCGAAGT CACCGAGCGG ATTCGGCTCG AGCGTGCGGC GCTGCTCTCA CGCTATTTGC AGGCCGTCGT CGAGGCCGCG CCGGATGGCG TTATCGCGTG GTCGCCGGAT CTCACGATCC TGGCGGTGAA TCGGCGATTC ACTGAGATGT GCCGGCTGCC AAGCGAGGCG ATTCCTGTCG GCGGCGACGT CGTCGAGCTG CTGCAGAGGT ACGGCTCGTT ACTCCGTGAA CCACAGCGTC TGCTGGACGC TTTTGAGTAC GCACGCCGCA ATCCGACCGA AGCGCAGAGC CTGGAACTCA CCCTTGCCGA TGGGCGGATT GTCGAAACGT ACGGGGCGCC CATCACCGAC GAGAGTGGGA CGCTCCTCGG GCGGGTCTGG TACGTGCACG ATGCGACCGA ACGACGCGCG GCCGAGGCAC ACCGCGACCG GTTGCTCCGC GAGCTTGCCG CCGTACAGCG TGCTCAGCAG TTCTTGCTCG ACGCGTCGAC AGTCTTGGCG CGCGTCAGCG GATTCTCCGA GTCGCTGCAC GCGCTGGCCG CGGCCGCCGT GCCGGCCCTC GGTGACATCT GCATCGTCGA CGTCCTGGTG GATGACGGCC GGCGCATCGA GCGGGTCGCG GCGGTCCACG CGGACCCTAC CGCCCAGCCC CTGGTGGATG ACCTGCGACG GCGTTTCCCG CCGCGGCTGG ACGGCGACAA TCCGGCCGCC CAGGTGCTGC GTGACGGCGT GTCTCGCTGG GCCGCGGAGA TGAGCGACGA CTTCCTGCGG GCGACGACAC GCAATGAGGA GCACTACCAA TTGGTCCGTG CGTTGGGATA CACCAGCTTT ATCACGGTGC CCATGATTGC GGACGGTCAG GTGCTCGGGA GCATCACGCT GGTGAGCACC AATTCGCACC GGCGTTTCAC CGACGAGGAC GTGAAGCTGG CCGAAGAATT GGCTCGACGG GCGGCGCTCG TCGTGGCCAA GGAGCGCCGC TATGACGCCG AGCGCCGTCT CTCCCACAAC CTGCAGGCGA GCCTGCTCCC GAGCGATCTT CCGGTTTTCC CGGGTGTTGA TTATGCGGTC TGTTTCCAGC CCGGCACCCG TGACGCCGAA GTCGGTGGCG ATTTCTGGGA TGTCACCACC ATGCCGGACG GCGAGGTCGC CATCATGGTC GGCGACGTGG CCGGGCACGA CATGCAGGCC GCGGCGATGA TGGCCCAATT GCGTGCGGCA TGCCGGGCCA TCCGCGCCGA GACGCGTGGG CCGGACGAGC TCGTCGCCCG GCTGCACGCC CATTGGGATC AGCTGGGTCT GGCGCGGATG GCGAGCGCGG TTTTTGCCCG ACTACGCCCA TGGAGCGGAT TGTTGCGGGT TGCCTCGGCG GGCCATCCGC CGCCGCTCAT CGTCGAGGAC GGTCGGCCAT GGTTCGTTCC GATCGAGCCG AGTACGCCCT TTGGCGCCCC AGGCGGCGGA GCGTCGCTCT GGCAGGGCAC CCTCAGCCCA GGCGCGGTTG CTGTCTTCTA CACCGACGGC CTCGTCGAGG ACCGGCATCG CGACATTGAC GACGGCATGG CCCGCCTCGC CGTGGTGGTC ACCGAGCATT GGACCGAGCC GGCGAGTGCG ATCGCTGATC ACGTGATCAG CGCGTTGCTG GGCCCGGAAC GAGCCGACGA CGTCGCTGTT CTCGTCCTGC GTTGGCTGGG TCCAATCTGT TCGTGA
|
Protein sequence | MRCSVTDPDS PPDKGGQESS HDDTVGDEAT TAARPASPED VDAHLVIDSL VDAVLVVAPD GRIVLANSAA EKLLGAEPGS LSGAPLLDFV PQRYQRAHCA GFERYVRTGE GRLPAGQAVD VAARRRDGVE IPVEIRFGRA GKPTPEGFSV VGVLREVTER IRLERAALLS RYLQAVVEAA PDGVIAWSPD LTILAVNRRF TEMCRLPSEA IPVGGDVVEL LQRYGSLLRE PQRLLDAFEY ARRNPTEAQS LELTLADGRI VETYGAPITD ESGTLLGRVW YVHDATERRA AEAHRDRLLR ELAAVQRAQQ FLLDASTVLA RVSGFSESLH ALAAAAVPAL GDICIVDVLV DDGRRIERVA AVHADPTAQP LVDDLRRRFP PRLDGDNPAA QVLRDGVSRW AAEMSDDFLR ATTRNEEHYQ LVRALGYTSF ITVPMIADGQ VLGSITLVST NSHRRFTDED VKLAEELARR AALVVAKERR YDAERRLSHN LQASLLPSDL PVFPGVDYAV CFQPGTRDAE VGGDFWDVTT MPDGEVAIMV GDVAGHDMQA AAMMAQLRAA CRAIRAETRG PDELVARLHA HWDQLGLARM ASAVFARLRP WSGLLRVASA GHPPPLIVED GRPWFVPIEP STPFGAPGGG ASLWQGTLSP GAVAVFYTDG LVEDRHRDID DGMARLAVVV TEHWTEPASA IADHVISALL GPERADDVAV LVLRWLGPIC S
|
| |