Gene Shewana3_3887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3887 
Symbol 
ID4480098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4667106 
End bp4667789 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content51% 
IMG OID639728500 
Productphosphoglycolate phosphatase 
Protein accessionYP_871511 
Protein GI117922319 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.379252 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGAAC AGATTAAAGC GATTGCCTTT GATCTCGACG GCACATTGAT TGACAGTGTG 
CCCGATCTCG CGGTCGCGAC CCAGGCGGCA CTCGCCGAAT TAGGTTTGGC AAGGTGTACC
GAGGCACAGG TGAGAACTTG GGTGGGCAAT GGCGCTGAAA TGCTGATGCG CCGCGCCATG
AGCCACGCTT TAGGCACAGA TGTTGAGCAA GCGGCATTGG ATGCGGCTAT GCCCATCTTT
ATGCATCACT ATCAAGAAAA CCTTGAGAAG CACAGTGCAC TCTATGCCGA TGTGCACCAA
GTGCTGCAAA TCCTGTTTGA TGCAGGATTT AAGCTGGCGG TGGTGACCAA TAAGCCTTAT
CGCTTTACCT TGCCTTTGCT TGAAGCCTTT AAGATTAATG ACTTCTTTAG CCTAGTGCTT
GGCGGTGATT CGCTGGCGAA GATGAAGCCA GACCCATTAC CGCTCGAGCA TCTATTAGCC
GAATGGCAAC TCGATAAAAG TGAGTTGTTG ATGGTGGGCG ATTCTAAAAA TGACATTTTA
GCAGCGAAAG CGGCGGGTGT TGCATCAATC GGCTTGACCT ATGGCTACAA CTACGGTGAA
GATATTGGGC TCACTGGCCC TGACGCTGTA TGCGAGCAGT TTGCCGAGAT CCTGCGCTGG
CTAAATCTCG CTCAGCCAGT TTAA
 
Protein sequence
MREQIKAIAF DLDGTLIDSV PDLAVATQAA LAELGLARCT EAQVRTWVGN GAEMLMRRAM 
SHALGTDVEQ AALDAAMPIF MHHYQENLEK HSALYADVHQ VLQILFDAGF KLAVVTNKPY
RFTLPLLEAF KINDFFSLVL GGDSLAKMKP DPLPLEHLLA EWQLDKSELL MVGDSKNDIL
AAKAAGVASI GLTYGYNYGE DIGLTGPDAV CEQFAEILRW LNLAQPV