| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3686 |
|---|
| Symbol | |
|---|
| ID | 4479887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4425469 |
|---|
| End bp | 4426308 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639728291 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_871311 |
|---|
| Protein GI | 117922119 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGATT TACGCTTATT GCGCTTTTTT ATCGCGATTT ATGAAGAAAA CAATATTACG
GCGGCGGCAA CGCGCTGTTA TGTCAGCCAG CCCTCGCTCT CGGCTGGGCT TAAACAGTTA
GAGGAAGAGC TTGGCGGCGC CTTATTCGAG CGCAGTAAAA AAGGCGTAAA AGCCTTGGAC
AGTGCCCACT ATCTGTATCC GCTGGCGGTT AAATTGGTGG AGGAGGCCAG TAAATTACCC
GCTCTATTTA TGGCAAAAGC GAGTCGACAA AAGTTGCGTT TAGCCGTGAT GCCCGATCTG
AGTCAGCGTC GCCTTGCTGG GCTATTAACT CAAATCAATC AGGCGATTAG CCATTTAGAT
TTAGAGCTGG TGGATTATCA AAGCCCTGCG GATTGTCGAT TAACCTTAGA CAGTTTACGC
CATGAGGATG AAGTGTTTTT TCCGCTGTGG GAGGAGGACT ATGTGTTGTG TGTGCCAAGG
GAGCATTCAC TGGCCCAAGT TAGCAGTATT CGCCCCGAAG AGTTAAGTCA GTACGACTTT
ATTGAGTGCC CACCCTGCGA GGCGCACCAG CAAACCATAG GCTTACTCGC CTGCAGCAAT
TTGTCGCTCA ATTTGGTGGC GAAGGCAGAA TCTAAGTCTT TGGTTATGTC GTTGGTACTG
GCGGGATTTG GGGTGAGTTT TCTCCCCGAT GGATTAATCG AAGACGAGCC TCGACTTAAA
CAGATTAAAT TCGATGGGCC TCGGATGTTC CGCCGTATCG GTTTGTGTTA TCCATCCCAT
CAAACCGTTG CGCCTACGTT GGCAACATTG CTACGGCATT TGAGCAAAAC CACGGCTTAA
|
|---|
| Protein sequence | MVDLRLLRFF IAIYEENNIT AAATRCYVSQ PSLSAGLKQL EEELGGALFE RSKKGVKALD
SAHYLYPLAV KLVEEASKLP ALFMAKASRQ KLRLAVMPDL SQRRLAGLLT QINQAISHLD
LELVDYQSPA DCRLTLDSLR HEDEVFFPLW EEDYVLCVPR EHSLAQVSSI RPEELSQYDF
IECPPCEAHQ QTIGLLACSN LSLNLVAKAE SKSLVMSLVL AGFGVSFLPD GLIEDEPRLK
QIKFDGPRMF RRIGLCYPSH QTVAPTLATL LRHLSKTTA
|
|---|
| |