| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3129 |
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| Symbol | |
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| ID | 4477723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 3753033 |
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| End bp | 3756539 |
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| Gene Length | 3507 bp |
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| Protein Length | 1168 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 639727733 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_870759 |
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| Protein GI | 117921567 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.527009 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAATCA AACCACTCAC TTTTTGTACA TTGTTTGCAT TTATTGCAGC GCCAGTTTCA
ACCTTTGGCG ATGATACAGA ATTATATGTT AAAGAGTCGA CGACTCGCAC GGGAGCTAGG
CCTAAAGTCT TGGTTATTTT TGACAACTCA GGGAGTATGT CAACCGAAGA GATTACTCAA
GTGGTTGATT ATGATCCTAG TTATGATTAT CCCCCTGTAA GTGGCTCTGG TTACAGCGAC
AGCCGGATTT ATTACACAGT TGGTGGTGGC GCATTACCAA CACCTGATAC AAATTCTGAT
AGACGAAATT TCAGTGCCAG TATTAACGGC TGTAATCAAA GTAAAGCAGC ATTGGATCAA
TATGGGCGTT TTACAGGTTA TATTCGTGAG TTTACATCGA GCGGTACGAC TGGTGTATGG
AAAGAACTTC CCGAAACAGA TGGACGCAAC ATCACTATCG TGGATTGTTG GGAAGATATT
ACTAAAGTAG ATCCTAATAA CTCATCTTCT TATAATGATG GGTTTCCTGC TAATGGCTTA
ACTACTGGTT CTGGCAAGAA AAAGAAGGCA TATCCATATT TCATTTCATC CTATCCTAGT
AGCACATGGG GGGATGCCTT AGCTGCAGCG AAAAATACGG ATTTTGGTGT TGGTCAGCCA
GTCACTTTTT ATAGTGACAA TTATTTAAGA TGGTATTGGT TATCTAAGGC TGGGAAATTA
CCAACTATGA AAGTTGCTCG ATTAGATATC GCAAAAAAAG CTATATCTAA TATTATTAGC
TCTACACCCA CGGTTGATTT TGGATTAGCT GTTTTTAATT ACAATTATCC TAATGAGGGT
AATCGGGATG GTGGCCGGAT AGTTTCTGGT ATTACACAAA TGACGGATGC TGCTCGAGAC
AGCTTGCTCT TAACTATTGA TAAGTTACCG GCAAAAACTA ATACACCTTT GTGTGAGACT
ATGTATGAAG CCTATCGTTA CTTTGCAGGT CAAGGAGTGA AGTATGGACA TGGCGATACC
GATTACGGTT CTTATGTAGG AAACCGCCCT CCGTATGACA CTTCTGTTGA AAAAGGAGGG
GCTTATAGTA GTCCGTTTAA GGTTTGTACA GATATTGCCT ATGTTATTTA TGTAACTGAT
GGTTCGCCAA CTGTCGATAA AAGTGCTAAC AATGATGTTA TAAGCTTAAC TTCGACAGGA
AGTAAAGATG GAGATTATTC TTCATTTTCT AAAAATTTAG ATACACCAAG CTATTTACCA
GCACTAGCAA GTTATATGTT CAATAATGAT TTGATCAATA AGCTGGATAG CTCTAACACT
GAACAAATGC AAAATGTACG CACTTATACT ATTGGTTTTA GTAAAGGTGC TGAAGATGCT
GCTCCTTTAT TAGCTGAAAC AGCTAAACGT GGTGGGGGGT TATATTTTGC GGCTCAGAAT
AGTTTAGAGT TACAAAACGC ACTTAATGAT GCATTATCAA ATATTCTGAA TATCGACTCT
AGTTTTACCT CTCCAAGCAT TGCCAGTAAT AACTTTGATA GAACTCAAAC TTTTGATGCT
GCTTACTATG CGATGTTTTT ACCAGGCAAA GGCCCACGTT GGAGTGGTAA CTTAAAAAAA
CTTAAGGTAA CAGGCGATGG AACCTTAGTG GATAGTCAAG GAAATGCTGC AATTGCTGAT
AATGGTAATA TTAAAGATAC GGCTTGTACT ATTTGGTCTG ATTGTGCAAG TCAAAAAGAT
GGAAATAAGG TAGAGGTTGG TGGTGCTTCT GCTCAAATAA AGAGCCAAGC GAACCGAACT
ATTTTAAGTA ATTTAGGAGG GGCTAGTAGT TTGTCTCCTC TGACATTATC AAATGCACAA
AATGCCGCAG GAGGCGATCA AGCTTTAGCT ACCTTTATGA GAACCAGTAT CGATGAAGTC
GCTAATACTT TGGACTGGCT GAAAGGTATT GATGTTGACG ATGACAATAA AAATGGTAGC
ACAACTGATA AACGTAATGA TGTAATGGGC GATCCTTTGC ATTCAAAACC ACTTGCATTG
AATTTTGGTA GTAAAACGGC AACAGATATC AGAATTATTC TTGGTACTAA CCAAGGTGTT
TTACATATGT TTAAGGATGG TGGAGAGGCA GTATCCGAAA CATGGGGATT TATTCCTTAT
GAGCTTCTAC CTAATTTATT TGAGCTTAGA ACAAATGATC CATCCGGTGT ACACACAGTT
TATGGAATGG ATTCCTCTCC AGTTGCATAT ACTGAGACCG ATTCAACAGG TAAAGTAAAC
AAAGCGTGGG TTTTTGCAGG TATGCGCCGA GGTGGCTCAT CTTATTATGC ATTAAATGTG
ACTAATCCTG ATAACCCCTC TCTGATGTGG ACTATTAATC CTTCTACAGA TGGTTTTGCT
GATCTTGGTC AGACTTGGTC TGAGCCTATT GTCACTAAAA TAGTGGGCTA TGAAAAACCT
GTTCTGATTT TTGGGGGAGG ATATGATGTG AGCTTCGATG CTACTCCATC TAGTTCACCA
TCGGGACGAG CTGTCTATAT TGTTGATGCT GAGAAGGGAA TCTTAATACA CTCCTTTGGT
GGCTCAGCTA GTGGAGCTAC TGTACTACCA GATATTCAAG GCAGTATTCC TAATTCTGTC
GCTGTACTTG ACAGCAACAA TGATGGTTAT ACAGACCGAA TTTATGCGTC AGATGTTACT
GGTAACATTT GGCGGATGGA TTTACCAAGT GCGAGTATTG ATACTTGGAC TGCGTTCAAA
TTCGCATCAT TGGGGGGAAC TAATAGTGAT AACCGGCGGT TCTTCGCTGA GCCAGTTGTT
GCACAAACGA TGTTTACAAA TTTATCTGAA GTATCAGTGA CGACAGGAGG TGAGACTGTC
ACAACCAAGA CATCTCAAAA TGTTCCCTAT GATGCTGTTG CTGTTGGTAG TGGTATGAGG
CCTAGTCCTT CAAGTACAAG CGTTAATGAT ATGTTTTTCA TGCTTCAAGA TCGTAATGTG
GTCACTAAGA GTTTTACTGG TAGTAACATT CCTTCAGCTA TTACTATCAA CAATTTGTAT
GACGTTTCAT CAAGTGCCCC CACTTCAGAG ACAGATAATA TTAGCTTTAG TACTAAGTTA
GGTTGGTTTT ATGATTTTTC AGGAGTCGGT GAGAAAAGTT TAACCGCTGC ACTAATTATT
GATGGTAAGG TGTATTTCAC GTCTTATTCT CCTCCGGCGG ACTCTGTTGC TGATAATGTA
TGTGTTGTTT CTGGTAGTGG TAAACTTTAT GCGTTTGATT TACATAAAGG GACAAGAACA
TTTTCCCAAC TGTACTACGA ACTTGGAGAG CGTGTGCCTG ATACCCCACA AATAGTGATC
CCTGCACCTG AAACAGGAAA AGATCCTTAT ATTTATATTA TTGGTGTTGG CAAAGGTGAT
AAAAATGAAA ATGGTGAATA CAGTGGCACG ATAAATGTGG CTTCAGGTTT AGGGGTAAAC
AAAATTTATT ATCATATTGA TGAGTAA
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| Protein sequence | MLIKPLTFCT LFAFIAAPVS TFGDDTELYV KESTTRTGAR PKVLVIFDNS GSMSTEEITQ
VVDYDPSYDY PPVSGSGYSD SRIYYTVGGG ALPTPDTNSD RRNFSASING CNQSKAALDQ
YGRFTGYIRE FTSSGTTGVW KELPETDGRN ITIVDCWEDI TKVDPNNSSS YNDGFPANGL
TTGSGKKKKA YPYFISSYPS STWGDALAAA KNTDFGVGQP VTFYSDNYLR WYWLSKAGKL
PTMKVARLDI AKKAISNIIS STPTVDFGLA VFNYNYPNEG NRDGGRIVSG ITQMTDAARD
SLLLTIDKLP AKTNTPLCET MYEAYRYFAG QGVKYGHGDT DYGSYVGNRP PYDTSVEKGG
AYSSPFKVCT DIAYVIYVTD GSPTVDKSAN NDVISLTSTG SKDGDYSSFS KNLDTPSYLP
ALASYMFNND LINKLDSSNT EQMQNVRTYT IGFSKGAEDA APLLAETAKR GGGLYFAAQN
SLELQNALND ALSNILNIDS SFTSPSIASN NFDRTQTFDA AYYAMFLPGK GPRWSGNLKK
LKVTGDGTLV DSQGNAAIAD NGNIKDTACT IWSDCASQKD GNKVEVGGAS AQIKSQANRT
ILSNLGGASS LSPLTLSNAQ NAAGGDQALA TFMRTSIDEV ANTLDWLKGI DVDDDNKNGS
TTDKRNDVMG DPLHSKPLAL NFGSKTATDI RIILGTNQGV LHMFKDGGEA VSETWGFIPY
ELLPNLFELR TNDPSGVHTV YGMDSSPVAY TETDSTGKVN KAWVFAGMRR GGSSYYALNV
TNPDNPSLMW TINPSTDGFA DLGQTWSEPI VTKIVGYEKP VLIFGGGYDV SFDATPSSSP
SGRAVYIVDA EKGILIHSFG GSASGATVLP DIQGSIPNSV AVLDSNNDGY TDRIYASDVT
GNIWRMDLPS ASIDTWTAFK FASLGGTNSD NRRFFAEPVV AQTMFTNLSE VSVTTGGETV
TTKTSQNVPY DAVAVGSGMR PSPSSTSVND MFFMLQDRNV VTKSFTGSNI PSAITINNLY
DVSSSAPTSE TDNISFSTKL GWFYDFSGVG EKSLTAALII DGKVYFTSYS PPADSVADNV
CVVSGSGKLY AFDLHKGTRT FSQLYYELGE RVPDTPQIVI PAPETGKDPY IYIIGVGKGD
KNENGEYSGT INVASGLGVN KIYYHIDE
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