| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3061 |
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| Symbol | |
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| ID | 4477776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 3668180 |
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| End bp | 3670330 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639727664 |
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| Product | transcriptional regulator domain-containing protein |
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| Protein accession | YP_870691 |
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| Protein GI | 117921499 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0196528 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000417149 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGATA AGAGTAAGTT GGGTTTTTAC TTGGGGAGTT GCCGTATTGA CCCTTCCGAT
AACTCAATTT TATTTCAAAC GCAGGGGGAT GAAACCTCCT CAAATGAATC CGCTAAAGTG
TCGCTTCAAC CTAAGTTTAT TGAAGTGCTT AGCTATCTTG CCCTGCGTTA TCCTCATGTG
GTTACCCGCG ATGAGTTGAT TACTCAAGTG TGGGAAGGCA ATGCCTACGT CGGCACTAAG
GCACTCACCA ACGCGATTTG GCATTTACGG CAGCAATTAT TGCCTCTAGA CGTGGATGGT
GGCGTGATTG AGACAGTGCG TAAGGCTGGC TATCGATTGT TGTTACCGCC TATCTACGAT
CAACTCGACG ATACCGAAGA AGATTTACGG CAGACCACTG AGACTAAATT GCAACATGCC
AATCAGCGTC TGCGTTTAAT GGCGATGGTG CTGGGGGCCG TGGCTGTTGT CAGTAGCTTA
TTTATTGGTA TGCATTTATA TCAAGATAAA CAGCGGATGA CGGATACCCA AATGACGGTG
CTGACTCGAG ATCCGGGTTC GGAGCGTTAT CCAAGGTTAT CCCACGATAG GCGTTGGCTT
GTGTATGGCG CGAGTCGTCC TGGGGTGACA TCTAGCCTCT ATCTTAAAGA TTTTAAACGT
GAAGATGTTC CCGCCCGTCA GTTAACCCCT TCAACATCGG TTGAGCTGCG TGCTGTGTGG
AGCTTAGATG ATACCAAGTT GTTTTTTGCC TCCCGCAGCC ACGCGACGGG AAAGTGCACC
ATTACCCAAT TGACTTTAGC GACCAATGAG ATGTTAGCTC TGGCGCCCTG TAGCACGGAT
ATGGCGGCGA TAGATATTTC CCCCGATGGT CAATATCTTG CTTATATCTC CTCCCACGAG
GCGGATAAAG TGGGAGGTAT TTACCGCTTA ACTTTAGCCA AAGCGGACGC TACGGCTGAA
AGATTATCCT GCGAAAGCCA GTGTAATTAT GAAGATAGAG ATTTAGCCTT TAGCCCCGAT
GGTAAATGGC TCGCGATAGC GAGGCGCTTT AGTAATATCT CTGAGGATAT TTTTATTCGC
GACTTAGCCA ATGCCAATGA AAAACGCTTA ACCCAAGGAC TAGAAGATAT TCGCGGCTTG
AGCTGGACGC CGAACAGTCA GGCGTTAGTG TTTGCCACGG AAGACTCTGG TAGTCGCAAT
GGTTTTACTA TCGATATCGA AACGGCCCAT ATTCGGCCAC TCGATGTCGA AGGTATGAGT
TATCCGAGTA GCGTATCCGA TGAGGGCGAG TTGGTTTATC ACCAGTATCG CCGGCAATTC
CAAATGGCGT ATTTTTCCCT CGGGGATAAA GTGCCGGGCA GTTTGTTTCC GCTGCTGTAT
TCCGGTATTA GCCATCGTAA TCCCCATTAT TCCCCAGAGG CGGGTCGAAT CGTTTTTGTC
TCCAGCGATA CTGGCTATAA CGAGATTTGG ACCTCGGATA TCAAGGGGCA AAAACTAGAG
CAACACACTC AGCTTAAGTC GCGTGTCGCT TACCCGCGTT GGTCACCCGA CGGTTCTAAA
ATTGCCTTTA TCGCCCCCGA TGATCGCAAT GAAGGCAATC GCATTTTTAT TTTAGATTTA
ACCAATAAGA ACATTACCGC CTTAGCCTCG AGTTATCACA ACCATGGTCG CCCCAGCTGG
AATTGGCAGG GTACTGCGGT ATTCGCATCG ACTAGCGACG GTATCACCGA GTTTTATTTA
GATAACAGTG CGCCCAAGGT GATAAGCCCT CTGAGTATGG CGGTGGGGTT TGCCAAGTCG
GCAACTGAAT TGGTGTTTAG TCGTTACGGG GTGAATGGAC TCTGGTTGAT TAATCTCGCG
CAGCCTGAAG AGGTAACACA GCTCATTTCC AGCAAAGTGT TTCGGTCTGG CAATAATTGG
GCAATGACGG CGGACGGGGT GTATTTCAAA TCCAGTAATG GCAATGAGCA GCGATTGAAT
TACTGGGAGG CGAGCAGCCA GCAAGTCACG CCACTCCTTA GGGTGCCCCG CTCGAGCCTA
AGCGGGTTTG GCTCCATGAC CTATATTCCG GAGTCAAACC GCTTAGTGAT GACGCTCGAT
GGTTTTCCGC AGCGGGATAT CATCTTACTT AAACACAAAC TGCTTCAGTA G
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| Protein sequence | MKDKSKLGFY LGSCRIDPSD NSILFQTQGD ETSSNESAKV SLQPKFIEVL SYLALRYPHV
VTRDELITQV WEGNAYVGTK ALTNAIWHLR QQLLPLDVDG GVIETVRKAG YRLLLPPIYD
QLDDTEEDLR QTTETKLQHA NQRLRLMAMV LGAVAVVSSL FIGMHLYQDK QRMTDTQMTV
LTRDPGSERY PRLSHDRRWL VYGASRPGVT SSLYLKDFKR EDVPARQLTP STSVELRAVW
SLDDTKLFFA SRSHATGKCT ITQLTLATNE MLALAPCSTD MAAIDISPDG QYLAYISSHE
ADKVGGIYRL TLAKADATAE RLSCESQCNY EDRDLAFSPD GKWLAIARRF SNISEDIFIR
DLANANEKRL TQGLEDIRGL SWTPNSQALV FATEDSGSRN GFTIDIETAH IRPLDVEGMS
YPSSVSDEGE LVYHQYRRQF QMAYFSLGDK VPGSLFPLLY SGISHRNPHY SPEAGRIVFV
SSDTGYNEIW TSDIKGQKLE QHTQLKSRVA YPRWSPDGSK IAFIAPDDRN EGNRIFILDL
TNKNITALAS SYHNHGRPSW NWQGTAVFAS TSDGITEFYL DNSAPKVISP LSMAVGFAKS
ATELVFSRYG VNGLWLINLA QPEEVTQLIS SKVFRSGNNW AMTADGVYFK SSNGNEQRLN
YWEASSQQVT PLLRVPRSSL SGFGSMTYIP ESNRLVMTLD GFPQRDIILL KHKLLQ
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