| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2919 |
|---|
| Symbol | |
|---|
| ID | 4479046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3495433 |
|---|
| End bp | 3497598 |
|---|
| Gene Length | 2166 bp |
|---|
| Protein Length | 721 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639727524 |
|---|
| Product | DNA helicase/exodeoxyribonuclease V, alpha subunit |
|---|
| Protein accession | YP_870551 |
|---|
| Protein GI | 117921359 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCG CTTTGCATGA AGACCAAATG CGTGTAACCA GTATTCCCTA TCGCTCGACC
AAGATGGTGA TATTCAGCGG TGTGCCGCTG GCCAAAGACT CTTACAAAAC CAATAGTGGG
AAGTATTTCG TCACCATCAA AGCCGACCCC GATAGCATCC CAGTGCTTCC AACGCTGGGT
CAGCATTGGT CAGTCAAAGG TGCTCGCCAG ATAGAAAGTG TGGAGATGGG TGATTATGTA
ATGCAGCAGC ACACTTATGA ATCACCCAAG CATATTGAAT GCACTTTACC CGAAACAGGT
GAGCAACTGA TACGCTTTAT CGCCAGAGAA AGTGACTTCA AGGGTATTGG TGAAAGCAAA
GCCAGGGCGC TCTGGCAGCT CTTGGGTAAA GACTTCCATG CCACACTGAA AAATGACACC
CCAGAGTCCA GAAAGCGTCT GACATCGATT CTGAGTGAAG ATTCAGTGGA AGCGCTCTTT
AAGGGGTACG CCAAATATAA AAACCTGGCA CATTGCAACT GGATGAGCGA GCACAACATC
CCCGCCAGTG TGCAGCAACG GCTGCTCAAG CATCACGGTG AAGCCTCCAT AGAGGTAATT
AAGGATAATC CTTATGCTTT GATGGGCTTT GGTCTTTCGT TCAGTGCCAT TGAAGATATT
ATCAAGGTAA CGGATTTTAA GAGCTATGTT GCGAAGGATG ACCCAAGAAG GCTCAGCGCT
GCTCTGGAAA TGGCGATTCG CAAGGAGATT GAAAAAGGTC ACACCTATAC CACTCATGCC
AATGTGCGCC CTTACCTCAA CAATCTACTG AAAGACAAAA CACTGGTCAC TCAGGCATTC
AAATCAGGTC ATGATAAAGC TCAGTATATT TTAAATCCCG ACACAGGAGC CTACCATCCA
ACGGCGCAAC TTCTGATGGA AAGTGTCGTT GCCAAACGGC TAAATACACT GATTAAGCGA
AATGACTTGT TTGATGAAAA CGCCAATGCT GCGTATTGCT CTGCGGTTGC GGAGCTTCCC
TACGAATTAA CTCCTAAACA AATCGAAGCC GTCACAACGT GTCTGGATAA TTCGGTAAGC
TGTATTACGG GCGGTGCAGG AACAGGCAAG ACAACGGTAC TCAGAACGGC TCTCAGGGCA
TATCATCAAC TTGGATTTGA AATACACGCC GTTGCGCTCA GCGGTCGTGC TGCAATGAGA
CTTCATGAGT CCATCGGTTT TGTTACCTCA ACCATTGCCA AATTGCTGCG TGAAGCCCCC
ATAGAACCCT GTGTCGAGAA AACAAATCAC CTACTGGTGA TTGATGAGGC AAGCATGATT
GACTTGCCAA CCATGTATCG TCTTGTGAAT CACATTCACC CCTCTGTACG ATTAATATTC
ACTGGCGACC CCGACCAACT TCCACCAATC GGCTGCGGCA AGGTGTTGGC AGACATCGTT
GAAGCAAAAA CGGTGGCTAA TACGATGTTA GATATCGTCA AGAGACAGGA AGGTTCAACG
GGTATCCCCG AATACTCAAA GCTCATCAAT CAAGGTGTGA TGCCTGATCG ATTAAGTACG
GGAGCAATAC ACTTTCACGA AACCAGTAAA ACAGACATTG CCAAAGTCTG TTGTGAGCTT
TACCAACAGT GTCCTGAAAA CAGTCGCGTC ATGGCTCCAA CCAAGGCACT CGTATCAGAA
ATCAATAAAC TTACCCAACA AGCCGTTAAC CCAGATAGCA CTAGCCTTGA GTTCGAAATC
AATGGTGATA AGTTCTTTTT GCCACTTCGC ATGAATGATG CGGTGTTATT CACGCAGAAC
CATTATGACA AAGGCATTCA GAACGGCTCA CTTGGTATGC TAACCAACGC CAAACCTTCT
GGTGATAGTT ACGGTGAAGT GACGCTAGAT ACAGGTGAAA AGGTCGAGAT AACACAATCC
GTTCTCGACT GCATGGAGTT GGGTTACGCA ATCACCCTAC ATAAAGCTCA AGGGTCACAG
TTTCCACGCA TCATCATCGC TCTGCAAAAC GGAAGAATAG TTGATAGAGC ATGGTTCTAT
ACGGCAATCA CGAGAGCTGA AAGTGAAATC CATATCGTTG GTAGTAGTGA TGACATGAAG
CAGATCACCG AGGCACCTAG TCACTCTCAT AAGCGGAATA GCTATCTGAA AGAACTGTTG
AGTTAG
|
|---|
| Protein sequence | MNTALHEDQM RVTSIPYRST KMVIFSGVPL AKDSYKTNSG KYFVTIKADP DSIPVLPTLG
QHWSVKGARQ IESVEMGDYV MQQHTYESPK HIECTLPETG EQLIRFIARE SDFKGIGESK
ARALWQLLGK DFHATLKNDT PESRKRLTSI LSEDSVEALF KGYAKYKNLA HCNWMSEHNI
PASVQQRLLK HHGEASIEVI KDNPYALMGF GLSFSAIEDI IKVTDFKSYV AKDDPRRLSA
ALEMAIRKEI EKGHTYTTHA NVRPYLNNLL KDKTLVTQAF KSGHDKAQYI LNPDTGAYHP
TAQLLMESVV AKRLNTLIKR NDLFDENANA AYCSAVAELP YELTPKQIEA VTTCLDNSVS
CITGGAGTGK TTVLRTALRA YHQLGFEIHA VALSGRAAMR LHESIGFVTS TIAKLLREAP
IEPCVEKTNH LLVIDEASMI DLPTMYRLVN HIHPSVRLIF TGDPDQLPPI GCGKVLADIV
EAKTVANTML DIVKRQEGST GIPEYSKLIN QGVMPDRLST GAIHFHETSK TDIAKVCCEL
YQQCPENSRV MAPTKALVSE INKLTQQAVN PDSTSLEFEI NGDKFFLPLR MNDAVLFTQN
HYDKGIQNGS LGMLTNAKPS GDSYGEVTLD TGEKVEITQS VLDCMELGYA ITLHKAQGSQ
FPRIIIALQN GRIVDRAWFY TAITRAESEI HIVGSSDDMK QITEAPSHSH KRNSYLKELL
S
|
|---|
| |