| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1992 |
|---|
| Symbol | |
|---|
| ID | 4476356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2371929 |
|---|
| End bp | 2373185 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639726574 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_869629 |
|---|
| Protein GI | 117920437 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.125579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0134883 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCAAC CATCTGTTAC AGCTCGTTTT TTTGTTCCAC GCTTAGGCTC ATTTCCCCTT
TATCTGAGTG GTGTTTTGCT CTGTCTCTCG GTGAGTGGCT GCCAAGATCC TGAAATTAAA
ATCTCCCCCA AAATGTTGGT GGTGGAAAAA GTCACCACGG CAACCGTACC ACTCTATGGC
AATTATATTG GCGTGACCCA AGCTTCCTTA GATGTGGAAG TTCGGGCGCG GGTCGATGGC
TTTGTGGAGG AGAAGCGTTT TGTCGAAGGT AGTGCTGTCA AAGCGGGTGA ACTACTGTAT
CAGATTGATA ATAAACCCTA TGTGGCGGTG GTGAATCGTT TAAAGGCCAA ACTGTCGTCA
CAGCAGGCGA TTCTCGATAA GGCCGAGCGA GATGTGAAAC GCTTAAAGCC GCTGTATGAG
CAGGATGCAG CCAGTCAGCT CGATTACGAT AATGCGCTCT CCACCTTGGC TCAGGCGCGT
TCTAACCTCA CCGCGAGTCG CGCCGAGGTG GAAGAGGCCG AATTAGAACT CAGCTATACC
GAAATTAAGG CGCCAATAGC CGGACTGGTG AGTCGCTCCG AGGTCGATAT TGGCGCTCTT
GTGGGCAGTA AGGGCCAATC GCTACTGACC CGCGTTAAAC AAGTCGATCC GATTTATGTC
AGCTTTAATA TGTCGGCACT GGATTATTTA AATGCCCAGC GCCGCCTGAC CAGTTATTCG
GCGAAAAAAG AAGCCGAGGT CGAAGGTAAA GCATTGGCAG GCTTTGTGCG GATAACGCTT
CCTGATAGCA GTGAATATCG CTACCTCGGG GATGTGAGTT TTACCGATCC CCAGGTAAAC
CCTAACACTG GCACCTTTGA GGTGCGCGCC ATTCTGCCTA ATCCTGAAAA AGAGCTGTTG
CCCGGCCAAT ATACTAATGT GCGGATTAAA CTGTCCGAAA TCCCCAATGC GATTGTTATC
CCGCAAAAAG CGACCCAAGT GGATCAGGGT GGGGTGTACG TGATGGTGGT ATTGCCCAAT
AACACGGTCG AGCGACGTTT TATCGTGATC GATCATCAAG GGATTGAAGG GGTTGTGGTT
AAAAGTGGCC TCAAAGCTGG CGAGATGGTG ATCACCGAAG GCATGCACCG TGTACGCCAC
GGCCAGATTG CCGAGCCGTT AAGCGCGAAG GAATACGCTG AGAAGGAAGA TGAGATGTCA
AAAGCCGAGG CACTTAAGCG CCAAGCCTTG GAGCAGCAAA AGCAGGAGCA AAAATAA
|
|---|
| Protein sequence | MPQPSVTARF FVPRLGSFPL YLSGVLLCLS VSGCQDPEIK ISPKMLVVEK VTTATVPLYG
NYIGVTQASL DVEVRARVDG FVEEKRFVEG SAVKAGELLY QIDNKPYVAV VNRLKAKLSS
QQAILDKAER DVKRLKPLYE QDAASQLDYD NALSTLAQAR SNLTASRAEV EEAELELSYT
EIKAPIAGLV SRSEVDIGAL VGSKGQSLLT RVKQVDPIYV SFNMSALDYL NAQRRLTSYS
AKKEAEVEGK ALAGFVRITL PDSSEYRYLG DVSFTDPQVN PNTGTFEVRA ILPNPEKELL
PGQYTNVRIK LSEIPNAIVI PQKATQVDQG GVYVMVVLPN NTVERRFIVI DHQGIEGVVV
KSGLKAGEMV ITEGMHRVRH GQIAEPLSAK EYAEKEDEMS KAEALKRQAL EQQKQEQK
|
|---|
| |