Gene Shewana3_1270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1270 
Symbol 
ID4479844 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp1483912 
End bp1485396 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content56% 
IMG OID639725824 
Productmajor facilitator transporter 
Protein accessionYP_868910 
Protein GI117919718 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGCTT TATCGCGATG GAGATGCAAT ATGAACGATG ATTCTCATCT TTTCACAACC 
TGTACCGCCC CTGCCAGACG TCCCCCATGG CTCGGGTTGT CCGTCCTGTT GCTGGCTGGC
TTCGTCACCA TCTTTGACCT GTTTGTGGTC AATGTGGCCA TCCCCAGCAT GCAAGCAAAC
TTGGGGGCGA GCTTTGCGCA GATTGGCTTT ATCGTCGCGG GTTATGAACT GGCCTTCGGT
GTATTGCTTA TTATGGGCGG ACGATTAGGC GATTTGTTTG GTCGCCGCCG GTTATTCATC
GTTGGTATGG CGGGATTCAC GTTGGCATCG GCGATGTGTG GGTTAGCCCC CAGCGCAGAA
ATTTTGATCG TTGCGCGCGT GTTGCAGGGC CTAGCTGCTG CATTACTGTT CCCGCAGGTC
TATGCTTCCA TTCGCGTGAA TTTCGACGGC GACGATAGTC GGCGCGCCTT TGGCTTGCTG
GGTATGACGC TGGGCCTGGC CGCCATCGCT GGCCAGGTGC TGGGTGGTTG GCTGGTGCAT
GCCGATCTGT TCGGATTAAG CTGGCGTACG ATCTTCCTCA TCAACGTACC TATCGGGCTG
TTCGCGATCA CCGCAGCATC TTGCATTCCC GAGTCCAGAG CCGAGCAAAG CCCGGCACTG
GATTGGAGTG GTGTGATACT GGTCAGTAGT GGGCTGGCAC TCTTGCTGGT GCCGCTGATT
GAGGGGCCTG GGCAAGGCTG GCCTGCCTGG AGCCTGTGGA GCTTAGGCGG CGCCGTAGCG
CTGATGGTGA CGTTTTATCG GTATCAGGAG CGTCAGCGAA TCGCCGGACG TTTTCCGTTA
GTGGATATGC AACTGATGAG GCAGCGTCGC TTTGCGCTGG GAGCCTTGTT GGTTCTGCTA
GTCTATTCCA CATCCAGCTC ATTCTTTTTG TCCTTTGCCT TGCTGGTGCA AACCGGTTTG
GGGCTTGACC CCTTCGTCGC GGGCAGCATC TTCGCACCAT GCAGCGTGGG CTTCGTCTTG
GCATCACTAA CCGCACCCCG GCTAGTGGCA CTATGGGGAG CGCGCGCTAT CGTCGCAGGC
GCGTTGGTCT ACGCGATTTC CATCGGGCTG CTGATTACGC AAGTGCAGAT GGCTGGCGCA
GAGCTGCTGC CGGTAACGTT GATTCCCGTG TTAATCATAG TCGGAGCTGG TCAGGGTTTA
ATAATGACGC CACTACTGAA CCTGGTACTG GGCTTTGTAA AGGAGAACCA AGCTGGTATG
GCGTCTGGTG TGATTTCCAC TGTTCAGCAG GTCGGTGCTG CATTGGGTGT AGCCATAGTC
GGCATCCTGT TCGGGACGGC GTTGACCGCA AGTAACGGTG CGTTAGCGCA AGCGGACCAA
TACGCTTCGG CCTTTGTCTC GGGAATGCTC TACAACTTGG GTGCCGCGCT ACTTATATGC
TTTTTGTTGC TTATTCTGGC AAGGTCGCAA AGGTCGGCTA GCTAG
 
Protein sequence
MIALSRWRCN MNDDSHLFTT CTAPARRPPW LGLSVLLLAG FVTIFDLFVV NVAIPSMQAN 
LGASFAQIGF IVAGYELAFG VLLIMGGRLG DLFGRRRLFI VGMAGFTLAS AMCGLAPSAE
ILIVARVLQG LAAALLFPQV YASIRVNFDG DDSRRAFGLL GMTLGLAAIA GQVLGGWLVH
ADLFGLSWRT IFLINVPIGL FAITAASCIP ESRAEQSPAL DWSGVILVSS GLALLLVPLI
EGPGQGWPAW SLWSLGGAVA LMVTFYRYQE RQRIAGRFPL VDMQLMRQRR FALGALLVLL
VYSTSSSFFL SFALLVQTGL GLDPFVAGSI FAPCSVGFVL ASLTAPRLVA LWGARAIVAG
ALVYAISIGL LITQVQMAGA ELLPVTLIPV LIIVGAGQGL IMTPLLNLVL GFVKENQAGM
ASGVISTVQQ VGAALGVAIV GILFGTALTA SNGALAQADQ YASAFVSGML YNLGAALLIC
FLLLILARSQ RSAS