| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1267 |
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| Symbol | |
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| ID | 4479841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1480079 |
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| End bp | 1480666 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639725821 |
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| Product | TraF peptidase |
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| Protein accession | YP_868907 |
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| Protein GI | 117919715 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCTG CTTCTACTGC TGGCCCCGCA TCGCGTTCTC GCTCGCGCCT GAGCGTGCAC
ATCTTACTGA TAGTTCTTTC CGTCTGCGGC TTGGCTGCAT TGGCTTGGGC GTCCTTCGTG
CAGCCGTTGC CACGCCTGAT CTACAACCCG TCTGACAGCG TGGCAGTAGG CTGGTATCGC
CTCGATCCGC TGCACCACCC CTCCGACTCG CTATCACATA GGGCGGAAGT CGGCAGCATC
GTCCTGACCA CATTGCCGCC AGAAACGGCT GTGCTCGCCG CGCAGCGTGG TTACCTGCCA
GACCACATTC CATTGCTGAA ACGTGTGGGT GCAGTCGCAC CACAACATGT ATGCATTTCG
GCCGATCAGG TACGCATCGA CGGTGTACCG GTGGCCGCTC TGTTGCACAC CGATCGGCTT
GGCCGGGAGC TGCAAGCCTG GCCGCACTGC CGACAGCTTC AACCTGGCGA ACTGTTCCTG
TTGAGTGTGA CCAACCCGGC GTCGTTTGAC AGCCGCTATT TCGGCCCGGT CAGCGTGTCC
GCCGTGATCG GTATTGCGAG CCCTGTTTGG CTGGAGAAAC GTCAATGA
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| Protein sequence | MTAASTAGPA SRSRSRLSVH ILLIVLSVCG LAALAWASFV QPLPRLIYNP SDSVAVGWYR
LDPLHHPSDS LSHRAEVGSI VLTTLPPETA VLAAQRGYLP DHIPLLKRVG AVAPQHVCIS
ADQVRIDGVP VAALLHTDRL GRELQAWPHC RQLQPGELFL LSVTNPASFD SRYFGPVSVS
AVIGIASPVW LEKRQ
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