| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1016 |
|---|
| Symbol | |
|---|
| ID | 4479359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1187467 |
|---|
| End bp | 1188285 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639725557 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_868657 |
|---|
| Protein GI | 117919465 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG5266] ABC-type Co2+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.165771 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000595947 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAC GTTTACTTGC CTTAGTTAGC GCGCTCTGCA TCAGCCCATT GGCGAGCAGC
CATGACCGCT GGATTCTACC CAGCCACTAT AATGTCTCGG CCGAAAGCCA AGAGGCGGTG
TGGATCACAT CTGATGTGTC CGCCAGTAAC CAAGTGTTTA TGTTTGATAA ACCGGTCACC
GCCAGCGATG TTCGGGTGTA CTTACCCGAT GGTAAGCCAA GCTCCCCAAG TTCAAGCTAC
ACTGGCGGTC GTAAATCGGT GTTCGACGTG CAGTTACTGC AAGACGGTAC CTATAAGTTT
GAAAAGGAAG TCACGCCGAG ATACTTTTCT GTTTATAAAA TCAAAGGTAA AGAAGGCATG
GTTCGCAGTC GACTCGATAA AAAAGCGACA GCGGCCGTGA TGCCAAAGGA TGCCTATGAG
CTAAAAGGTT CATTAAATGT GGCGCGGGTC GAAACCTATG TGACCCGCAA CAAACCCACC
GATAAGGTAT TAGCGCCGAA AGGTGAATAC TTGGAATTGG TGCCTATTAC CCATCCCGCT
GATATCGTTG AAAATGAACC CGCTACACTG CAGTTTGTTT ACGATGGTAA ACCTGTCGAA
GGCGTGAGTG TAGCGATCAT GAAGGATGGC AGCCTGTACC GTAACAAGCC GGAAGAAATC
AGTTTAACTT CGGATAAAGA AGGTAAAGTG GCGATGACGC TGCCCGCTGC TGGTCGTTAT
CTGCTGCATG CTTCAATCGA ACGTCCAAGT CCTGATAAAT CGCTTGCCGA TAAAACAGTT
AGCGAAATCT TTTTGACCTT CGAAGCAGGG CTTGAATAA
|
|---|
| Protein sequence | MKLRLLALVS ALCISPLASS HDRWILPSHY NVSAESQEAV WITSDVSASN QVFMFDKPVT
ASDVRVYLPD GKPSSPSSSY TGGRKSVFDV QLLQDGTYKF EKEVTPRYFS VYKIKGKEGM
VRSRLDKKAT AAVMPKDAYE LKGSLNVARV ETYVTRNKPT DKVLAPKGEY LELVPITHPA
DIVENEPATL QFVYDGKPVE GVSVAIMKDG SLYRNKPEEI SLTSDKEGKV AMTLPAAGRY
LLHASIERPS PDKSLADKTV SEIFLTFEAG LE
|
|---|
| |