| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0350 |
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| Symbol | |
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| ID | 4479086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 384315 |
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| End bp | 386132 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639724882 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_867999 |
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| Protein GI | 117918807 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCATC GTAATCATTC CATCAGCCAC AGGATGACGC TCACTATTAT TGGGGTGAGC
TCGTTTTTTG CCGTCCTGAC TATGTTGGTG CAGTTGGTAT GGAACTATCA GGAGAGCATA
GATAAGGCCA CGGCAGATAT TCGTGAGTAT TCCGAGTCTA TCTTGCCTAG CATTGCTAAG
TCGCTCTGGG ATGTCGACCA TAGCCTGTTA TCCGATCTGT TGTCGGGTTT AGGGATGATG
CCCATGGTCT CGAGTGTCAA TCTCGAAAGT GTCGATGGTG TGACTATGCA GTTAGGTAAG
TCCTTAGGTG CGCAGGAGGA CAACCAAACT TCGTTTCATT ATCCGATTAT GTATCAAGAG
CAGCGGATTG GCTCACTCAC CGTTGGTCTG GACACCAATA AGCTGTATTA CGAATTATGG
CAGCAGTTGA TTATCATCGT CCTCGGCAAT GGCCTTAAAA CCCTGCTGAT GATTTACCTG
ATCCTCACTA TGGTGCGTTT ATTGGTGACC AACCGATTGT CGGCACTGGA GCGGTTTGCC
AATCAAATCA ATTTGAATTC ATTACCCAAA CTGAAAGTGC CCATCAGTGT AGTGACTAGC
CAAGATGAAA TTGGCCATGT AGCGCAATCG CTACAGGCCA TGTATCAGCG CATTCGCAAT
GACTTAGCCA TTAACAAACG TCAGGGGCGC GAATTACAAC AGCAGCAGAA TCAGTTGGCG
CGTTTAGTCG ACGAACGAAC TCAAGAGCTT AATTGGCAAT CCCAGGCGAA TCAGTTATTA
GCCGAGATGT CATTGCAGTT TTTAACCACA GATACCTCGC AACTGGATGA ATGCCTCGCC
GATGCCTGCC ATCGCATTGG ACTGTTATTC GATGTTGAAC GGGTCAGTAT TATTGAGTTT
ACCCAGCGCT ACGCCAATTA TCGTAGCTTT TGGAGCTGCG AGTCGCAGGC AAATCAGATC
CAAGATATCT CAGTCGATAG TGTTGCCGTG CTGGCACAAA AGTTTGTGTC GGAGTCGACG
TTAGTCATCG AATCGATTGA TTTTTTAGAG CGTGAGTCTC CTACGGAATA CCAAGCGCTG
CGCTCGGTTG GGATTTGTTC TATCGCCGCA TTTGCGATTA AAAATGCCAA TGAATTACTC
GGTTTACTCT CTCTTTCCAT GGTGAGCCGT CCATTAAATT GGAATCCACA AAAGAAGGTG
ATGCTGACTC AATTTGCGGC GGCTCTGAAC GAATTATTAC TGCGTGAGGA AAAAGAGCGA
CAGATGCTCA GCCTGCAACA GGCTTTAGTG TCGGTGAATG CTCAACTACG TGTGATGGCC
GAAACCGATG AGTTGACTGG TTTAAGCAAT CGTCGCCCTT TTACTCATAC TTTGGAAACC
TTGCTCCAAC AAGCTAAACC CGTGGGGTTG CTGATGTTGG ATGTCGATTA CTTTAAGAGT
TACAACGACA CTTACGGTCA CCTCGAAGGC GATGCGGCGC TTAGATTGGT TGCGCAGGCG
CTCAAACAGT GTGATGTCTT GCCGCAGGAT AGTTTGCTGG CTCGAATCGG TGGCGAAGAG
TTTGCGATTA TTCTTGAGCA GATAACGCCT ATCCAATTGG AGGCCATAGC CAACCAACTC
TGCTATCGAG TCGCCGCCTT GGATATTCCC CATCGTAGCT CTCCCAAGGG CAAAATTACC
CTCAGCATTG GTGGCGTGTA TCTCCCCTTA GATACAAGCG TTCGCGGTTT TACCCTCTCT
GAGGTGCTGC GCCGGGCCGA TATTTGTTTG TACCGCGCCA AAGAGCAAGG ACGCAATACT
GTGGTCATCG AATCGTAA
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| Protein sequence | MKHRNHSISH RMTLTIIGVS SFFAVLTMLV QLVWNYQESI DKATADIREY SESILPSIAK
SLWDVDHSLL SDLLSGLGMM PMVSSVNLES VDGVTMQLGK SLGAQEDNQT SFHYPIMYQE
QRIGSLTVGL DTNKLYYELW QQLIIIVLGN GLKTLLMIYL ILTMVRLLVT NRLSALERFA
NQINLNSLPK LKVPISVVTS QDEIGHVAQS LQAMYQRIRN DLAINKRQGR ELQQQQNQLA
RLVDERTQEL NWQSQANQLL AEMSLQFLTT DTSQLDECLA DACHRIGLLF DVERVSIIEF
TQRYANYRSF WSCESQANQI QDISVDSVAV LAQKFVSEST LVIESIDFLE RESPTEYQAL
RSVGICSIAA FAIKNANELL GLLSLSMVSR PLNWNPQKKV MLTQFAAALN ELLLREEKER
QMLSLQQALV SVNAQLRVMA ETDELTGLSN RRPFTHTLET LLQQAKPVGL LMLDVDYFKS
YNDTYGHLEG DAALRLVAQA LKQCDVLPQD SLLARIGGEE FAIILEQITP IQLEAIANQL
CYRVAALDIP HRSSPKGKIT LSIGGVYLPL DTSVRGFTLS EVLRRADICL YRAKEQGRNT
VVIES
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