Gene Shewana3_0308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0308 
Symbol 
ID4479467 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp346356 
End bp348101 
Gene Length1746 bp 
Protein Length581 aa 
Translation table11 
GC content50% 
IMG OID639724840 
Productdiguanylate cyclase 
Protein accessionYP_867957 
Protein GI117918765 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.164957 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAATCT GTATGGGCCG AGCGACATGG ATGGGTTTAC TCACATTGGG AGCATTGCTG 
CTCATCTGCG TGGCATTCAC GACCAAGGCC GCAACGGCAG AGATATCCTG GCAGGATAAT
ACGACCAGTC TCACCGACTT TCCGATGAGC TATTTTGTCG ATACCTCGGA GAACATGCCC
TTTACTGAAG TCACGCAACA AACCTTTATC GACTCCAGCA ATCGCGTATC TCTTGGCACA
GCCGCCATCA AAACCTGGGC AAAGATCCCC TTAGTTAATA CCAGCAATAG CCCACAAACC
CTGTATCTGC ACCATCCCTA CGCCTATCAC AATCGCCAGG TTGGACTCTA TGAAACAGTC
GATGGGCAGG AGACACTGCG CCGAATACTC GACCTCGACG ACCCTAGCAC CTATGGCTGG
CTCTATGGCG GTGCGGCGGT ATTTGAGGTC ACACTCGCGC CACACCAAAA GAAAACCCTA
TACGTCGAGA GCGTGTCCTT TTCACACCAA TGGTTCTCAA TCGATTTATA CAACAAGGAA
CAATCCCAAC GAGCATTGCT CGGCAGCTTT ACCGATATTG CGGTTATGGT GGGCATGCTA
CTGGCGCTGA TTATCTACAA CCTATTGTTA TTTATGTATT CCCGCCAGCG GGACAATCTG
TTTTACGCCT GTTACTTAAT CTCAGGCGGG ATCTGGATTG CCCTCTCCTA TGGGCTGGTC
GCCGAAGTAT TCGCGTTTTA CGGCTCAGCC AGCCTGTATT GGCACCTTAC CCTGATGACC
ATGCCCATCT TTTTGATTTT ATTTATGATG GATATTTTCG AGACTCGGCA ACATTATCGC
TTCGAGCATT ATGCCCTCGT CTTTGTGCTC GTCCTGTTAG TGGCCGAATT TTGTTATGGC
GTGGTGGATA TCATTGGTGC GCTGCGCTAT TCCAGCAGCC TGGCTGCCTT GATGATGTTA
ACTACCCTCT CGGTCACGAT TTCGCTGGTG ATAAAACGAC ATCCCATCGC GAAATACTTT
CTCCTCGGTC ACTGTCTTTT CGTCGGTTTT AGTGGTCTTG CGGTGATGTT TTACAAAGGC
CGCGCCGAGT TTAGCTATCT CTCAAGCCAC GGTGTCGGCG TGGGCATTAT GCTAGAGGCG
CTAGTGCTTG CACTTATCAT CGCCTATCGC ATCCGTCTGC TCGAAGAAAT TAAAGCCTCG
CAGGAAGAAC TTAAATATCA AGCGGCGACA GATTCGCTCA CCCATTTATT TAATCGCCGT
CATTTCCACA AAGAAGCGCA GCGGATCTAT ATGCAGGCTA GCGTGACACA ACAACCCATG
GCGGTGATTA TCTGTGATAT CGACCTGTTC AAACGGGTCA ACGACAAATA CGGCCATCTG
ATGGGCGATC AGGTCATTAT CGATATTGCC ACCACACTCA AACAGCATGC GCGTAAATGT
GACATAGTGG CGCGCTACGG CGGCGAAGAA TTTATTATGT TGCTACATGA CGTGTCCCTT
ACCGAGGCAC ACCAATGCGC CGAACGCATT CGCAGCGCCG TTGCTGAGCT AAGCTTTATG
GCCGAGACGC AAGAAGCCTT CACTGTCACC CTGAGTCTTG GGGTGGCGGC CGTTGATTTT
GTCCATCCCC TAGAGCATGC CATCAAGCTG GCGGACGATG CCCTGTATCG CGCTAAACAT
CAGGGCCGTA ACAATGTGCA ATCCAGCGAA ATCAATCTAT TAGAGATAAA GGAAGGCATA
AACTAA
 
Protein sequence
MRICMGRATW MGLLTLGALL LICVAFTTKA ATAEISWQDN TTSLTDFPMS YFVDTSENMP 
FTEVTQQTFI DSSNRVSLGT AAIKTWAKIP LVNTSNSPQT LYLHHPYAYH NRQVGLYETV
DGQETLRRIL DLDDPSTYGW LYGGAAVFEV TLAPHQKKTL YVESVSFSHQ WFSIDLYNKE
QSQRALLGSF TDIAVMVGML LALIIYNLLL FMYSRQRDNL FYACYLISGG IWIALSYGLV
AEVFAFYGSA SLYWHLTLMT MPIFLILFMM DIFETRQHYR FEHYALVFVL VLLVAEFCYG
VVDIIGALRY SSSLAALMML TTLSVTISLV IKRHPIAKYF LLGHCLFVGF SGLAVMFYKG
RAEFSYLSSH GVGVGIMLEA LVLALIIAYR IRLLEEIKAS QEELKYQAAT DSLTHLFNRR
HFHKEAQRIY MQASVTQQPM AVIICDIDLF KRVNDKYGHL MGDQVIIDIA TTLKQHARKC
DIVARYGGEE FIMLLHDVSL TEAHQCAERI RSAVAELSFM AETQEAFTVT LSLGVAAVDF
VHPLEHAIKL ADDALYRAKH QGRNNVQSSE INLLEIKEGI N