Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0308 |
Symbol | |
ID | 4479467 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 346356 |
End bp | 348101 |
Gene Length | 1746 bp |
Protein Length | 581 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639724840 |
Product | diguanylate cyclase |
Protein accession | YP_867957 |
Protein GI | 117918765 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.164957 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAATCT GTATGGGCCG AGCGACATGG ATGGGTTTAC TCACATTGGG AGCATTGCTG CTCATCTGCG TGGCATTCAC GACCAAGGCC GCAACGGCAG AGATATCCTG GCAGGATAAT ACGACCAGTC TCACCGACTT TCCGATGAGC TATTTTGTCG ATACCTCGGA GAACATGCCC TTTACTGAAG TCACGCAACA AACCTTTATC GACTCCAGCA ATCGCGTATC TCTTGGCACA GCCGCCATCA AAACCTGGGC AAAGATCCCC TTAGTTAATA CCAGCAATAG CCCACAAACC CTGTATCTGC ACCATCCCTA CGCCTATCAC AATCGCCAGG TTGGACTCTA TGAAACAGTC GATGGGCAGG AGACACTGCG CCGAATACTC GACCTCGACG ACCCTAGCAC CTATGGCTGG CTCTATGGCG GTGCGGCGGT ATTTGAGGTC ACACTCGCGC CACACCAAAA GAAAACCCTA TACGTCGAGA GCGTGTCCTT TTCACACCAA TGGTTCTCAA TCGATTTATA CAACAAGGAA CAATCCCAAC GAGCATTGCT CGGCAGCTTT ACCGATATTG CGGTTATGGT GGGCATGCTA CTGGCGCTGA TTATCTACAA CCTATTGTTA TTTATGTATT CCCGCCAGCG GGACAATCTG TTTTACGCCT GTTACTTAAT CTCAGGCGGG ATCTGGATTG CCCTCTCCTA TGGGCTGGTC GCCGAAGTAT TCGCGTTTTA CGGCTCAGCC AGCCTGTATT GGCACCTTAC CCTGATGACC ATGCCCATCT TTTTGATTTT ATTTATGATG GATATTTTCG AGACTCGGCA ACATTATCGC TTCGAGCATT ATGCCCTCGT CTTTGTGCTC GTCCTGTTAG TGGCCGAATT TTGTTATGGC GTGGTGGATA TCATTGGTGC GCTGCGCTAT TCCAGCAGCC TGGCTGCCTT GATGATGTTA ACTACCCTCT CGGTCACGAT TTCGCTGGTG ATAAAACGAC ATCCCATCGC GAAATACTTT CTCCTCGGTC ACTGTCTTTT CGTCGGTTTT AGTGGTCTTG CGGTGATGTT TTACAAAGGC CGCGCCGAGT TTAGCTATCT CTCAAGCCAC GGTGTCGGCG TGGGCATTAT GCTAGAGGCG CTAGTGCTTG CACTTATCAT CGCCTATCGC ATCCGTCTGC TCGAAGAAAT TAAAGCCTCG CAGGAAGAAC TTAAATATCA AGCGGCGACA GATTCGCTCA CCCATTTATT TAATCGCCGT CATTTCCACA AAGAAGCGCA GCGGATCTAT ATGCAGGCTA GCGTGACACA ACAACCCATG GCGGTGATTA TCTGTGATAT CGACCTGTTC AAACGGGTCA ACGACAAATA CGGCCATCTG ATGGGCGATC AGGTCATTAT CGATATTGCC ACCACACTCA AACAGCATGC GCGTAAATGT GACATAGTGG CGCGCTACGG CGGCGAAGAA TTTATTATGT TGCTACATGA CGTGTCCCTT ACCGAGGCAC ACCAATGCGC CGAACGCATT CGCAGCGCCG TTGCTGAGCT AAGCTTTATG GCCGAGACGC AAGAAGCCTT CACTGTCACC CTGAGTCTTG GGGTGGCGGC CGTTGATTTT GTCCATCCCC TAGAGCATGC CATCAAGCTG GCGGACGATG CCCTGTATCG CGCTAAACAT CAGGGCCGTA ACAATGTGCA ATCCAGCGAA ATCAATCTAT TAGAGATAAA GGAAGGCATA AACTAA
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Protein sequence | MRICMGRATW MGLLTLGALL LICVAFTTKA ATAEISWQDN TTSLTDFPMS YFVDTSENMP FTEVTQQTFI DSSNRVSLGT AAIKTWAKIP LVNTSNSPQT LYLHHPYAYH NRQVGLYETV DGQETLRRIL DLDDPSTYGW LYGGAAVFEV TLAPHQKKTL YVESVSFSHQ WFSIDLYNKE QSQRALLGSF TDIAVMVGML LALIIYNLLL FMYSRQRDNL FYACYLISGG IWIALSYGLV AEVFAFYGSA SLYWHLTLMT MPIFLILFMM DIFETRQHYR FEHYALVFVL VLLVAEFCYG VVDIIGALRY SSSLAALMML TTLSVTISLV IKRHPIAKYF LLGHCLFVGF SGLAVMFYKG RAEFSYLSSH GVGVGIMLEA LVLALIIAYR IRLLEEIKAS QEELKYQAAT DSLTHLFNRR HFHKEAQRIY MQASVTQQPM AVIICDIDLF KRVNDKYGHL MGDQVIIDIA TTLKQHARKC DIVARYGGEE FIMLLHDVSL TEAHQCAERI RSAVAELSFM AETQEAFTVT LSLGVAAVDF VHPLEHAIKL ADDALYRAKH QGRNNVQSSE INLLEIKEGI N
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