| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0164 |
|---|
| Symbol | |
|---|
| ID | 4478301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 186990 |
|---|
| End bp | 189002 |
|---|
| Gene Length | 2013 bp |
|---|
| Protein Length | 670 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639724684 |
|---|
| Product | phytanoyl-CoA dioxygenase |
|---|
| Protein accession | YP_867814 |
|---|
| Protein GI | 117918622 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCCAA GATCAAAGCC TGATGCAGGG CAGCGCGAGG CGCTTTTGAG ATTAAAGCTG
TTTGCACAGG CGCTACTGCA ATCTCACTCT GCGGGGGAGG CTAAGCGGCT TATCGATCCA
ATGCTGGCGC AGTTATGCCA ATTGACAGGG TTGGAGCTGC ACCCGGCGTT GTTTCTCGAT
ACTGAGGCCA GCATGACCCC TTTTGGCAAG GCGGTATCTC CAACAACTGC GGCGCAATGT
GCAGAAGATC CCGAGCGTAG CAGAGTGTTT ATTCAGGGAA TTCATCAAGC GATACAGGAC
AAACTTAAAG CTAACTCGAA CCAACCAGTG CACATACTCT ATGCCGGAAC CGGGCCTTTT
GCTTGGTTAA TTTTGGCCCT ATTACCGCTA TTTACGGCTA AGCAAGTGCG AGTAACCATA
CTCGACATTC ATCGAGCGTC ATTGGAGAGT GTGGAAAAGC TACTGGCATA TTTCGATGTA
GCGGATCGTG TCGATGCGCT TATCTGTGCT GACGCTACGC TTTGGCGGCC AGCATCAACA
CAAGCCTTTG ATCTAATTAT TTCTGAAACC ATGAAACACC TGCTGCAACA GGAACCGCAG
GTACAGATTT TTAGCCATCT ACAGCATTTT TTAGCAGAGG ATGGATGTTT GATCCCCGAG
TCGATTGAGT TGGATGCGTG GCTCGAGCTA AAAGAGCAGC CGCCAATATA TTTGGGCCCT
TTATTCTGTC TCGATTTAGC CCATGCCCGC TTGCTCGCTC AAGGTGACAG AAGTGGGTTA
GCGGGGAGCT TATTGTTACC CGATTATGAT CCTCAACCCA TAAACCTAAA ATTGACGACA
AAAATCAGGG TCTATGGCGA ACACCAATTA CTTGAAAATC AATCACAATT AACCCTATCT
CAATATAAAA AATCCCTGTG GCTTAAACCA CTGAGTCGAG TGGACTTTAG CTACGAGCTG
GGAACCTATC CCGATTTTAT CTTCCAATAT CAGCAGCAGA AATTGCCACT TGTTGGCAGT
GAGGATTTGA GTTGTTTGGG GATTTATCAC TTGCAGCGAC TATGGCAAAA AATTCAGTTG
CAAAAGCGTG GACAGGTCAA TGAGGTTACT GAGAGAGAAT GGAACCTAGA TAAAGCGCTG
CTGGATTTGT GCGGCATTGG ATTAGAGCCT GGGATGAAGG CGCTCTATCA ATATGATACA
CAGGCTGATT TTATCGCCTT CGTTCAAAGG CAAACTCAGC TGACTACAGC GGATATCGTT
GGCATCAATC AGCGATTGCG TGCCTTATCC CAAGCTGAGC CAGAAAGCGG CAATACAGAG
CTAGCTTATG GTGCAGCTTT ACCTCAAGTG CTTACCGACG CCCAACTCTC CTCTTGGCAA
CGGGAAGGTT ATATAGTCAT CCCGCAAGTG TTGTCAAAAG CGCAATGTGC GGCGAGTCGA
GCCGTGATTT GGCAGCAGCT TGGCGCGAAT GAAAATGATC CATCAACTTG GTACCAGTCC
CATGAGTTGA TGCAGAAAAT CATGCTGCAG TTATTTCGTC ATCCCATCCT CGATGCCAAT
CGGCAAACAC CGCTAATCCG CCAAGTCTTT GAACAATTAT GGCAGCGTAC CGATTTAGTG
ATGACAACTG ATAGAGTGAG TTTTAATCCT CCTGAAACGC CCACTTGGCA GTTTCCTGGC
CCCAATATGC ATTGGGACAT GCCACTGCAA CTACCTGTGC CATTTGGGAC TCAAGGATTG
ATTTATCTGA CAGATACCCC TGCCGAGCAG GGGGCATTTT GTTGTGTTCC CGGCTTTCAC
CTCAAAATAG AAACCTGGCT ACAGGAACGA AACAAGACTG ATATTGAGTT GCAGCAACAG
CGTTGGGAGG AGTGGTCCAT TAAACCCATT GCGGCAAATG CAGGGGATTT AATTATTTGG
CACCATGCAT TGCCCCATGG ACCGACGCCA AATCGAGGCC TGTTACCCCG CATGGTGCAG
TACATTAACT TCTACCCAAT GGCTAGCCAA TGA
|
|---|
| Protein sequence | MMPRSKPDAG QREALLRLKL FAQALLQSHS AGEAKRLIDP MLAQLCQLTG LELHPALFLD
TEASMTPFGK AVSPTTAAQC AEDPERSRVF IQGIHQAIQD KLKANSNQPV HILYAGTGPF
AWLILALLPL FTAKQVRVTI LDIHRASLES VEKLLAYFDV ADRVDALICA DATLWRPAST
QAFDLIISET MKHLLQQEPQ VQIFSHLQHF LAEDGCLIPE SIELDAWLEL KEQPPIYLGP
LFCLDLAHAR LLAQGDRSGL AGSLLLPDYD PQPINLKLTT KIRVYGEHQL LENQSQLTLS
QYKKSLWLKP LSRVDFSYEL GTYPDFIFQY QQQKLPLVGS EDLSCLGIYH LQRLWQKIQL
QKRGQVNEVT EREWNLDKAL LDLCGIGLEP GMKALYQYDT QADFIAFVQR QTQLTTADIV
GINQRLRALS QAEPESGNTE LAYGAALPQV LTDAQLSSWQ REGYIVIPQV LSKAQCAASR
AVIWQQLGAN ENDPSTWYQS HELMQKIMLQ LFRHPILDAN RQTPLIRQVF EQLWQRTDLV
MTTDRVSFNP PETPTWQFPG PNMHWDMPLQ LPVPFGTQGL IYLTDTPAEQ GAFCCVPGFH
LKIETWLQER NKTDIELQQQ RWEEWSIKPI AANAGDLIIW HHALPHGPTP NRGLLPRMVQ
YINFYPMASQ
|
|---|
| |