| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3469 |
|---|
| Symbol | |
|---|
| ID | 4482825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 4331773 |
|---|
| End bp | 4332987 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639724217 |
|---|
| Product | Fmu (Sun) domain-containing protein |
|---|
| Protein accession | YP_867360 |
|---|
| Protein GI | 117926743 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATGC CTTCGGCGCA CACACAACTG GTGGCGCAAC TGGCCGAACA GATTTTGAAT
CACCCTGAAC GGGCGGTTGA TGGTATACTG CGGCGCAGTT TTAAGGAGCA CCCGCAGATG
GGCAGCGGAG ATCGGCGACG CGTGAGTGAT CGTCTTTATC TGCTATTGCG TCATTTGCGG
CGGTTCAATG GCCTGCATAC GGGGCAACCC TATCTGCCAG CCTGTGAAGC ACGCGCGTTG
CTGCCTTTGG TGCAGATGGC AGAGCAGGCT TTGAGTGAGG GTTTACCACC CCGCCAACCG
CAGGAGTCGG ATGGGTTATA CTACAGCCTG CCCGATTGGT TGTGGCAGGC GTGGTGTGAG
CAATATGGGC AGGATGCTGC CCAGATGTTA GCGGCGGCCA TGTTGGAGCA GGCTCCGGTG
GATCTGCGGG TCAATCGGCA GCGGGCCAGC CGGGAGGGGG TGGCGCAGCG GCTGTTGGAA
AGTGGGGTAG AGAGTGCTCC CTTGGCCATC AGTGCCGATG GATTGCGGTT GACGAAGCGC
CATCTGTTGC GGGATCATCC GGTCTTTTTG GAGGGACTGG CTGAAATTCA GGATGGGGGC
AGTCAGTGCA TTGCTCCATT ATTACAGCCT GTTGCGGGTC AGTTGCTGGT GGATTTTTGT
GCAGGTGGTG GGGGTAAAAC AGTGCATCTG GCGGCTTTGA TGCAGAATAA GGGGCGCATT
TTGGCGTTGG ATACCCAGGA GCATCGGCTT AAGCGGTTGG CTCCTCGGCT CAAGCGCAAT
CAAATTAAAA TGGTGCAGAG CCACACCATC CGCCATGAGC GGGACCCTTG GTTGAGCCGT
TGGTATGGCA AGGCCGATGG GGTGTTGGTG GATGCACCAT GTAGTGGTAG TGGTACCTTG
CGGCGTCATC CTGAGATTAA GTGGCAGTTG GAGCCTGGGC AAGTGGGTTC ACTGGCCATT
CAGCAGGGGG CGTTATTGGA GGGGGCTGCG CATTTGGTCA AGCGGGGAGG GCGGCTGGTG
TATGCCACCT GCTCTTTGCT GGCGCAGGAA AACGAAGAGG TGGTGGAAGC ATTTTTGCGC
ACCAACCGGG GTTTTCGGTT AGAGGAGATC CAAGGGTTGG GCGATTTACA GCGGTTGGCA
ACACCTTATT TAAAGGTGAT GCCGCAGCAG GCACAAACCG ACGGCTTTTT TAGTGCTGTC
TTGATACGTA CGTAG
|
|---|
| Protein sequence | MSMPSAHTQL VAQLAEQILN HPERAVDGIL RRSFKEHPQM GSGDRRRVSD RLYLLLRHLR
RFNGLHTGQP YLPACEARAL LPLVQMAEQA LSEGLPPRQP QESDGLYYSL PDWLWQAWCE
QYGQDAAQML AAAMLEQAPV DLRVNRQRAS REGVAQRLLE SGVESAPLAI SADGLRLTKR
HLLRDHPVFL EGLAEIQDGG SQCIAPLLQP VAGQLLVDFC AGGGGKTVHL AALMQNKGRI
LALDTQEHRL KRLAPRLKRN QIKMVQSHTI RHERDPWLSR WYGKADGVLV DAPCSGSGTL
RRHPEIKWQL EPGQVGSLAI QQGALLEGAA HLVKRGGRLV YATCSLLAQE NEEVVEAFLR
TNRGFRLEEI QGLGDLQRLA TPYLKVMPQQ AQTDGFFSAV LIRT
|
|---|
| |