| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3170 |
|---|
| Symbol | |
|---|
| ID | 4483274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3951777 |
|---|
| End bp | 3953366 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639723919 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_867066 |
|---|
| Protein GI | 117926449 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0139391 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.072114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAATA ACCTTGAACA TGCGCCCCAC GGGGACGCGG CCCGCTCGCT GGATCTGGCC
ACCCTGGTCT ATGCGGTCTT TACGGCGGGG CTCTGCTCCA TCATCTACGA ACTGCTGATT
GCCACCACCG TGGTCTATTT TTTGGGGGAT AGTGTGCGCT ACTTCTCCCT CACCATTGGG
CTCTATATGG CCTCTATGGG GGCGGGGGCC TATCTTTCCA AATATATGCA GGGCGTGCTG
CTGCACAAGC TGATTGTGGC GGAGATCATT CTCGGTTTGG TGGGGGGCTT TTGTGTGCCG
CTGCTCTATC TGGCGTTTAC CTATGAGGCG CTGTTTCTCC CCCTGTACGT GGTGTTAACC
CTGACGGTGG GTTTTCTGAT TGGGCTGGAA GTGCCCCTAT TAACCCGTAT TTTGGAGGGC
TACGACAGCC TGCGGGTGAG CATCGCCCAT GTGCTTTCGT TGGACTATCT GGGGGCATTG
GTGGCAACGG TGGCGTTTCC GCTGCTGCTG TTGCCGCTAT TTGGCATCTT TCGCAGTGGA
CTCTTTTTTG GGTTGGTGAA CATGTCCATC GCGGTGCTGT TGTTATGGCG TTTTGGCTCG
CGTCTGGGGT CTCACCGCAT CAAGAGTTAC CGGTTGGCGG CATGGTCCAT TACGCTGGCC
ATCGGCGCGG GTCTGCTGTT TGCCCAAGTG CTACTACAGG CGTGGAACCA GAGTGTCTAC
CGAGATCGGA TTTTGCACAC CGAACATACC GCTTACCAAG AGGTGGTGCT AACCAAACGG
CGGGATGATC TGCGTCTCTA TCTCAATGGT GCCTTACAAT TTTCGACCAG TGATGAGTTT
CGCTATCACG AAGCGCTGGT GCATCTGCCC ATGGCCTATG TGCAGGCTGC TAAAGCGCGC
GGGCCGCTCT CGGTGTTGGT GTTGGGCGGG GGTGATGGTA TGGCGGTGCG GGAGCTGCTG
CGCTACAACC GTATTGAGCG GATTACCCTG GTGGATCTGG ATGAGCGGGT GCTCAAACTG
GCGACGGAGA ACCCCTATCT ACGTCAAGCC AATGCCGCCA GTCTGAGCCG GGATGAGCGG
GTCAAGATCC GGGTGGGGGA TGCCATGCGC TTTTTGCAGG AGCGGGCCGC GTTGTTTGAT
CTGATTGTGG CAGATCTGCC CGACCCCAGT AGCACCGAGA CGGCGCGTCT TTACAGCCGG
GCTTTTTACC GGTTGGCACG CAGTAATTTG GCCCCAGCCG GGGTGTTTGT TACCCAAGCC
ACCAGCCCCT TTCATGCGCG GGAGGCCTTT TGGACAACCC ATGCCACGGT GGCAGATGTG
TTTGCCCAGG CCCGTCCTTA CCATCTATTG GTGCCATCGT TCGGGGATTG GGGCTTTGTG
ATGGCGGGGG GGGCCGTACT GCAAACACCG CTGGAGCAGG TGGTTAAAGA TTTTCCGCCT
GGGTTACGGC ATCTGCGCCC CGCCATGGCG ACGGGTATGT TTATGTTTGG TAAAGATGTG
GAAGATCCTG GTCAGTTGGG GATCTCCACC CTGGATCAGC CGCAGGTGCT GGAGCGCTAT
CGGGCAGGTT GGCGACACTG GGGTGGGTGA
|
|---|
| Protein sequence | MQNNLEHAPH GDAARSLDLA TLVYAVFTAG LCSIIYELLI ATTVVYFLGD SVRYFSLTIG
LYMASMGAGA YLSKYMQGVL LHKLIVAEII LGLVGGFCVP LLYLAFTYEA LFLPLYVVLT
LTVGFLIGLE VPLLTRILEG YDSLRVSIAH VLSLDYLGAL VATVAFPLLL LPLFGIFRSG
LFFGLVNMSI AVLLLWRFGS RLGSHRIKSY RLAAWSITLA IGAGLLFAQV LLQAWNQSVY
RDRILHTEHT AYQEVVLTKR RDDLRLYLNG ALQFSTSDEF RYHEALVHLP MAYVQAAKAR
GPLSVLVLGG GDGMAVRELL RYNRIERITL VDLDERVLKL ATENPYLRQA NAASLSRDER
VKIRVGDAMR FLQERAALFD LIVADLPDPS STETARLYSR AFYRLARSNL APAGVFVTQA
TSPFHAREAF WTTHATVADV FAQARPYHLL VPSFGDWGFV MAGGAVLQTP LEQVVKDFPP
GLRHLRPAMA TGMFMFGKDV EDPGQLGIST LDQPQVLERY RAGWRHWGG
|
|---|
| |