| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3152 |
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| Symbol | |
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| ID | 4483290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3925535 |
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| End bp | 3927496 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639723900 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_867048 |
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| Protein GI | 117926431 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000175722 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00223393 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTAA CCACCAAGAC GACGATTTTT ACTATCACCC TCTCAATGGC TCTGCTGGTG
GTTTTATTGA TTATCAGTCT CTACGCCTTT CGCCAGTTTT CCCTTTCCAA TGCAGAAGAA
CATGCCCGTA CAGCGGCTGA AATTGTGCGG GTTGGGCTAA CCGAAGCGAT GGTCAACGGG
GTGATCACCG AACGAGAGCG CATGCTCCAG CGCTTATCGG CGGTGGAAGG ATTGCGGGAT
GCTCGGGTGG TGCGTGGGCA GCCGGTTGTT AAACAGTTTG GCGAAGGTCT CACCCAAGAA
CGGGATCTGG ACAGTATTGA AAAAGATGTG CTCAGCCATG GTAAGGCACA GACCTTTTTG
GAAGAAGGTG GAGAAGAGCC GATCTTTCGC ATGACCATTC CCTACATCGC CACCCAAGAG
AGCAACCCCA ACTGTCTAGC CTGTCATGAT GTCAAACCGG GTGCGGTATT GGGGGCGGTA
ACAATCTCAA TCTCCTTGGG TAACCAAAAG AGCCAGGCGT TGCTGACGGT TGGTGCCATG
GTGCTGGCGT TAGGCATCTT TTCCGGGATC ACGATTTTAT TGGTGCGGGG TCAAATTCGC
GCCATTGTGG CAACCGCAGA AGGGGTTAGT CATGTGGTCT CCTTGGCCAA AGGTGGCGAC
TTTACGGCAC GCATTGAGCT TAAAGAGCAG CGGGATGATG AGATCGGCAC CATCGCCCAG
GATCTCAACG ATATGATGGG GCATCTGCAA GAGAGCCTAG GTGGCCTAAC CCGCGATGTG
GCACGGGTCA TTCAATATGA GTCCACCGGC CATAAAAACA TACTCGATAC CACCACCCAT
ATGGTGGATA CCCTCGTCAA CGTCGCCCAC TTTAAACAGA CCATCGAAGA AGATCGCACC
CCGATAGAGG TCTATCAGCA TATTGGCCAT GTACTTAGAG ATGAGTTTTT GATTCAGCGT
TACACCATCT ACGAGGTGCT CACCGATAAA GACCAACTAG AGACCATGGT GGTGGATGGC
GAGCTCAAAG CGGGTTGTCG TTGGTGCGAT CTCCAAATTT TGGCCCAGGC CGAGGCGTGT
CGTGCACGTC GCAGCGCCGG TGGCCGGGTG GTGGATGCGG TGGATACCCC CGGGCTATGC
AATATGTTCT CCCCCAGAAA AAATATGGAG GGGGATTGGA CCCATATGTG TATCCCTGTC
TTGCACTCCG GCACCATTAG TGTGGTGGTG CAGTTGGTGG TAGAACGCAG TCATGCGACC
TTTTTCCGTC ATCAGTTACC GTTTATTCAG GTTTATCTGC GGGAAGCAGC CCCGGTTATT
CAGGCCAAGC GGCTATTGGA TACCTTGCGG GATTCTGCCT TGCGAGATGC CATGACCGGC
TTGCATAACC GTCGGTTTTT GGAAGAGTAT CTGGATACGA TGCTGGCTAC CGCTAAGCGG
CAAGGTAACT CCATTCGCAT TATGATGTTG GATCTGGATC ACTTTAAAAA TGTGAACGAT
ACCTACGGTC ACGATGCGGG TGATGCGGTG TTGATTGGTT TTGGCAAGGT TGCCATGGCG
CAGGTGCGTG CCTCGGATAT GGTGATCCGC TACGGTGGTG AGGAGTTTAT GGTGCTCATC
GCTGAGGGTA AAGATGAAGG GGGGAGTGCC GGGGATGTGG TGGCGGAGAA AATCCGCGCT
GCGGTGGAGG CCATGCGTAC CCCGGTTGGG GGGCATGTGT TGTCCAATAC GGTGTCGGTG
GGTCTCTCTC GCTTCCCGGA TGATGGGGGT GAGTTTTGGG AGGTGGCCAA ACTGGCGGAT
GTGGCGCTCT ACCAAGCCAA GCGCAGTGGC CGTAACCGGG TGGTCAGTTA TGTGGCGGGT
ATGGAGTCGG AGGATGAGGA TAAGGCTGCG GCCAAAGGTC CCTCTCCCCG AGGGGGTGAA
GCGCCGGTGC GTGCTAAAGA AGAGAAGCCC CGCAAGGGCT AG
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| Protein sequence | MKLTTKTTIF TITLSMALLV VLLIISLYAF RQFSLSNAEE HARTAAEIVR VGLTEAMVNG
VITERERMLQ RLSAVEGLRD ARVVRGQPVV KQFGEGLTQE RDLDSIEKDV LSHGKAQTFL
EEGGEEPIFR MTIPYIATQE SNPNCLACHD VKPGAVLGAV TISISLGNQK SQALLTVGAM
VLALGIFSGI TILLVRGQIR AIVATAEGVS HVVSLAKGGD FTARIELKEQ RDDEIGTIAQ
DLNDMMGHLQ ESLGGLTRDV ARVIQYESTG HKNILDTTTH MVDTLVNVAH FKQTIEEDRT
PIEVYQHIGH VLRDEFLIQR YTIYEVLTDK DQLETMVVDG ELKAGCRWCD LQILAQAEAC
RARRSAGGRV VDAVDTPGLC NMFSPRKNME GDWTHMCIPV LHSGTISVVV QLVVERSHAT
FFRHQLPFIQ VYLREAAPVI QAKRLLDTLR DSALRDAMTG LHNRRFLEEY LDTMLATAKR
QGNSIRIMML DLDHFKNVND TYGHDAGDAV LIGFGKVAMA QVRASDMVIR YGGEEFMVLI
AEGKDEGGSA GDVVAEKIRA AVEAMRTPVG GHVLSNTVSV GLSRFPDDGG EFWEVAKLAD
VALYQAKRSG RNRVVSYVAG MESEDEDKAA AKGPSPRGGE APVRAKEEKP RKG
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