| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2709 |
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| Symbol | |
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| ID | 4483063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3423836 |
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| End bp | 3425032 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639723454 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_866608 |
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| Protein GI | 117925991 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0391766 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCAGCA AACCGCACCA GATCATCGGC AACAGCACCG CTCTGAAAGC GACCTTGGCC
AAAGCCAAGA AGGTCGCCAA GACGGTGCTG CCCGTGCTGA TCACCGGTGA GAGTGGTACC
GGCAAGGAGC TGTTTGCCCA ATTCATCCAT GACCAGAGCC GCAGAGCTCA GAAACCGTTC
GTCGCCGTCA ATTGCGCCGC CATACCTGCG GAATTGCTGG AAGCGGAGCT GTTTGGGTAC
AAGAAAGGCG CGTTCAGTGG GGCAACCAGC GACAAAGACG GCCTGTTTGT CCAGGCCAGC
ACCGGAACCC TGTTTCTGGA TGAAATCGGG GATATGCCAC TGCCACTCCA GGCAAAGATC
CTTCGGGTGT TGCAGGAAGG AGAAGTCCGG CCCGTCGGAG CCAAGGCCGT ACAGAAGTTG
GATGTTCGGA TCCTCTCCGC CACCCACCGT GACCTGACCC AAATGGCGGC GGACAGGAAA
TTCCGCGAGG ATCTGATCTT CCGTCTCAAG GGATATGCGA TCCAACTCCC CGCCCTCGGA
GAGCGTGGGC ATGACATCGT CAAGCTGGCC CGGGCATTCC TAAAATCCCG AGAGGATTTC
GCCGGGATCG GCTTGAGCCG TGATGCCCAA ACGCTCCTGA TGGCCTATCA TTGGCCGGGC
AATGTGCGGG AGCTGCAGAA CATCATCCTG GCCGCAGCGG TGGATGCCCG TAGGAATATT
TTCGCTGAGC ACCTGGCTGA ACACCTGCCG GATGCCATCG ACGTCGAAGA TCCAAGCATG
TCAGTGAGGG AGCGGATCAT TTCAGCGCTC CAGGAATCGG GCAGTTTGGC TTTGGTCGAC
CTGCAGAGCA GGCTGAAGAC TCCCAAACCC ACGATTCACC GACACCTGAC CAGCATGGTG
GCTGAGGGAG ATGTGTCGCG GTCTGTCGTC TCTGGCCAGA CGCTCTTTGC CTTGGCAGAA
CCCAATGTTG AAGGCGATGT ACCCCAGCTC ACTCAGCGCC AGGAGCAGGC CGTTGCCCTC
ACGCGAGAGC ATGGCCGAAT CACCCGGCAG GAGTTGGCGG AGGCGCTGGG AATCTCCATC
CGAACCGCGA GTCGTGAGCT GTCCACGTTG GTGGCCGTTG GGGCACTGGC CCCTGATGGC
CAAGTTGGCC GCATGGCTGG TTACCACGTT CAACGAAACA GATTGAAGAG CCGTTGA
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| Protein sequence | MSSKPHQIIG NSTALKATLA KAKKVAKTVL PVLITGESGT GKELFAQFIH DQSRRAQKPF
VAVNCAAIPA ELLEAELFGY KKGAFSGATS DKDGLFVQAS TGTLFLDEIG DMPLPLQAKI
LRVLQEGEVR PVGAKAVQKL DVRILSATHR DLTQMAADRK FREDLIFRLK GYAIQLPALG
ERGHDIVKLA RAFLKSREDF AGIGLSRDAQ TLLMAYHWPG NVRELQNIIL AAAVDARRNI
FAEHLAEHLP DAIDVEDPSM SVRERIISAL QESGSLALVD LQSRLKTPKP TIHRHLTSMV
AEGDVSRSVV SGQTLFALAE PNVEGDVPQL TQRQEQAVAL TREHGRITRQ ELAEALGISI
RTASRELSTL VAVGALAPDG QVGRMAGYHV QRNRLKSR
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