Gene Mmc1_2105 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_2105 
Symbol 
ID4481334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp2576772 
End bp2577488 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content61% 
IMG OID639722849 
ProductSOS mutagenesis protein UmuD 
Protein accessionYP_866012 
Protein GI117925395 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.499933 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCGCC CCCCTTTAAG CCCTGCTCAA TTACGCCTGT GGCAAACCCT GTGCGCCCAC 
ATAACCACCC ATGGGCTGCC CCCCACCGTC GCCGAACTGT CGGCACAGCT GGGCATCAAA
CCCCCCAGCG TACACGCACA GTTGCAGGCT TTGGCACGCA AGGGTTGGCT GCGACACACC
CCCCACAAAG CACGCAGTCT CACCCCTCTG GATGAGGCCG GCCAACCCCT CTTACACCCC
AAGGAGAGCA CACCCATGGA GAGCCGCCCA ATCATGTCAG CCCCCCCCAG AGTGACCCAA
CGGTTTCGCC CGGCTGAGCA GGCCCGCTTT ACCATTCCCC TGGCAGGGTC GCGGGTGGCG
GCGGGATTTC CCTCACCTGC GGATGATTTT GTGGAGGCCC AATTAGACCT TAACCAACAT
TTGGTCAAAC ACCCCGCCGC GACCTTTTTT GTGCGGGTGG CGGGAGAGTC CATGATCGAA
GCGGGCATTC ACCCTGGGGA TATTCTCGTG GTTGACCGCT CTCTACAGCC AGAGAGCGGC
CAGATTGTCA TTGCGGTGCT GGATGGCGAA TTGACCGTTA AACGGTTGGA AAAACGGGCT
GGCAAGCTGT TTCTTATGCC CGCCAACCGC AACTTCACCC CCATTGAAGT CGGCGCAGAG
GCCGACCTGC TCATCTGGGG GGTCGTGACC AGCACAGTGC ATCAATTTGG CCGCTGA
 
Protein sequence
MSRPPLSPAQ LRLWQTLCAH ITTHGLPPTV AELSAQLGIK PPSVHAQLQA LARKGWLRHT 
PHKARSLTPL DEAGQPLLHP KESTPMESRP IMSAPPRVTQ RFRPAEQARF TIPLAGSRVA
AGFPSPADDF VEAQLDLNQH LVKHPAATFF VRVAGESMIE AGIHPGDILV VDRSLQPESG
QIVIAVLDGE LTVKRLEKRA GKLFLMPANR NFTPIEVGAE ADLLIWGVVT STVHQFGR