Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_2105 |
Symbol | |
ID | 4481334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 2576772 |
End bp | 2577488 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639722849 |
Product | SOS mutagenesis protein UmuD |
Protein accession | YP_866012 |
Protein GI | 117925395 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.499933 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTCGCC CCCCTTTAAG CCCTGCTCAA TTACGCCTGT GGCAAACCCT GTGCGCCCAC ATAACCACCC ATGGGCTGCC CCCCACCGTC GCCGAACTGT CGGCACAGCT GGGCATCAAA CCCCCCAGCG TACACGCACA GTTGCAGGCT TTGGCACGCA AGGGTTGGCT GCGACACACC CCCCACAAAG CACGCAGTCT CACCCCTCTG GATGAGGCCG GCCAACCCCT CTTACACCCC AAGGAGAGCA CACCCATGGA GAGCCGCCCA ATCATGTCAG CCCCCCCCAG AGTGACCCAA CGGTTTCGCC CGGCTGAGCA GGCCCGCTTT ACCATTCCCC TGGCAGGGTC GCGGGTGGCG GCGGGATTTC CCTCACCTGC GGATGATTTT GTGGAGGCCC AATTAGACCT TAACCAACAT TTGGTCAAAC ACCCCGCCGC GACCTTTTTT GTGCGGGTGG CGGGAGAGTC CATGATCGAA GCGGGCATTC ACCCTGGGGA TATTCTCGTG GTTGACCGCT CTCTACAGCC AGAGAGCGGC CAGATTGTCA TTGCGGTGCT GGATGGCGAA TTGACCGTTA AACGGTTGGA AAAACGGGCT GGCAAGCTGT TTCTTATGCC CGCCAACCGC AACTTCACCC CCATTGAAGT CGGCGCAGAG GCCGACCTGC TCATCTGGGG GGTCGTGACC AGCACAGTGC ATCAATTTGG CCGCTGA
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Protein sequence | MSRPPLSPAQ LRLWQTLCAH ITTHGLPPTV AELSAQLGIK PPSVHAQLQA LARKGWLRHT PHKARSLTPL DEAGQPLLHP KESTPMESRP IMSAPPRVTQ RFRPAEQARF TIPLAGSRVA AGFPSPADDF VEAQLDLNQH LVKHPAATFF VRVAGESMIE AGIHPGDILV VDRSLQPESG QIVIAVLDGE LTVKRLEKRA GKLFLMPANR NFTPIEVGAE ADLLIWGVVT STVHQFGR
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