| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1726 |
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| Symbol | |
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| ID | 4482112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 2129203 |
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| End bp | 2130717 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639722468 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_865640 |
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| Protein GI | 117925023 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0909206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.287685 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCCCA ACACCATATG GGTGGTTGAC GATTCGGCTA CTATTCGCTT GATGTTAGAC
AAGTTTTATC GGGAACTTGG CTACCGGGTC GTCCTTATGA AGGATGGTTT AGAAGCGATC
ACTGCGGTCG AGTCGGGCAA TAAGCCAGAT CTGATGCTGC TGGATGTAGA TATGCCGGGC
ATGAACGGTT TTGATGTCTG CCGCATCATC CGTCAGCACC ATGACCAGCC CCCCACCTTA
CCCATCATCA TGCTCACCAG CAGCGATGAT GAGGCCGATA TTGAGCGCGC CTTTGCCCTT
GGGGTGGATG AATATCTGCT CAAGCCGGTC AACTGGTCGC TGCTCAAGCA GCGTACTCGG
CTATTGCTGG AGCGTCGGCA GGCGGTGCGT GGGCAACAGA GCTCGCAACA GTGGCTGGCT
GCCCTGTTTA GCACGGCTGT GGATGCCATT GTGGTGTTTG ACGAAGACGG CATTATTTTA
GACGTTAACC CCGCCTTAGA GCGGCTGTTT GGCTATGTGC GCGCGGTGAT GATTGGGCAG
GGTATTCAAC TGCTGTTACC AACGGCCCCT TCGGGTCCCG AATCGGTGGT GCAAACCCCT
TCGGTGGACC AAATCACCGC CAGTTCCGGT AGCGGGCAGG AGGTTAAGGC GCGTCATCGC
GATGGTAACC ACTTTATTGT GCAATTGGCG GTTTCGCGGG TAGAAAGCGA AGATGGGGAG
AGCCGGTTTT TCGCCATTAT CCACGATTTA ACCGAACAAA AAATGCTGCA AAAGGCGCTC
ATGGCTCGCA ATGAAGAGAT GCTGCGGGAG CGCTCCATCG TGGCAGATAT CCTAGACCGT
ATGCGCGCTC ATAGCACCAA TGATGTCACG GGTGTTTTCA CCATTTTTCA CCCCATGGAG
CGGGCTTCGG GGGATATCCT TATTGCCGCT ACCCGTCCCA CCGGGGTGCG TCATGTGTTT
TTGGGAGATT TTACCGGTCA TGGGCTTACC GCTGCTTTGG CGGGTCCTAT GGTGACGGAC
ATCTTTTGCA CCATGACCAA TAAGGGCTTT GCCCCCGATC AAATTTTGAC CGAGATGAAC
CGACAACTCC ACGTCAAACT ACCGACCACG CTGTTTCTCG CCGCCTCGTT TATTGAGTAT
GACCCGGCGC AAAAGCGGCT GTTTATTTGG AATGGTGGCA ATCCCCCCCT CTTTTTGTTG
CGCAATGATG GCAGCGTGCG GACCTTTCCC AGTCATACCC TGTCGCTGGG GATTGTCGGA
GGACAGAGTT TTGATGCCCA AGGGTGTACC CTACACGTGG AAGAGGGGGA GCAGGTCGTC
GCCTACACCG ATGGTATTAC CGAAGTAGCC GCACAGCATA GTGTGGATAT GTTTGGTGAA
GATCGGGTTG TTGAGCTGTT TCAGCGTGCC GACTCGCTGG AGGAGGTCAA AGATCTTCTG
CTTAAAGAGC TTTGCGCCTT TAGCGGTAGT GAGGTTATGG ATGATGACCT TTCCATGGTA
ATTGTGCAGT GCTGA
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| Protein sequence | MSPNTIWVVD DSATIRLMLD KFYRELGYRV VLMKDGLEAI TAVESGNKPD LMLLDVDMPG
MNGFDVCRII RQHHDQPPTL PIIMLTSSDD EADIERAFAL GVDEYLLKPV NWSLLKQRTR
LLLERRQAVR GQQSSQQWLA ALFSTAVDAI VVFDEDGIIL DVNPALERLF GYVRAVMIGQ
GIQLLLPTAP SGPESVVQTP SVDQITASSG SGQEVKARHR DGNHFIVQLA VSRVESEDGE
SRFFAIIHDL TEQKMLQKAL MARNEEMLRE RSIVADILDR MRAHSTNDVT GVFTIFHPME
RASGDILIAA TRPTGVRHVF LGDFTGHGLT AALAGPMVTD IFCTMTNKGF APDQILTEMN
RQLHVKLPTT LFLAASFIEY DPAQKRLFIW NGGNPPLFLL RNDGSVRTFP SHTLSLGIVG
GQSFDAQGCT LHVEEGEQVV AYTDGITEVA AQHSVDMFGE DRVVELFQRA DSLEEVKDLL
LKELCAFSGS EVMDDDLSMV IVQC
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