| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0880 |
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| Symbol | |
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| ID | 4483373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1076962 |
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| End bp | 1078062 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639721629 |
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| Product | hydrogenase formation HypD protein |
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| Protein accession | YP_864805 |
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| Protein GI | 117924188 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0409] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0825886 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCAAG CAAGCATGGA ACAGAAACTA CTGGCCCTTA CCCGTTTGCA GGTAAGTGAG
CCTATTAAGG TGATGAATTT GTGTGGAGGA TTTGCCCGGT TTTGGGCCGA GAGCGATTGG
CATCAATCCC TTAGCCGAGT GGTGCATATC ATGCCAGGGC CGGGCTGTCC GGTATGTGTC
TGTCCCGAAG CTGAAATTCG CGCGGCCATG CATTTGGCGG TGCGTGAGGA TGTGATCTTG
GCGGCGTTTG GTGACATGCT GTCGGTACCC ATCTCCTATG GGGCGGCGGG CTATGCCACC
TTGGATGGTG CGCGGCAAGA TGGCGCGGAT GTGGTTGCTG TGGCCAATCC TCATGAGGCG
GTCGAGCTGG CCTTACGTCA CCCCACCCGT GAAGTGGTCT TTTTTGCCAG TGGTTTTGAG
ACGGTCTCGG CACCACTGGC GGCGCAGTTT CTGGCGGGTG TGCCGGATAA TTTCTCGATT
TTAAATGCGC TGCGTTTAAG TTGGCCGGTG GTGGATACCA TGTTGTCGCA GCATGAGCGG
CGCCCTTTTA AAGCCATTAT TGCCCCGGGT CACGTGGCGG CCATTGTCGG TTCGGAGTGT
TGGCGTTTTG CGGTGACCCA GTATGGCATT CCCGTTTCCA TTAGTGGCTT TTCTGACCGT
AGCTTTTTGG CTTCACTGGA TACGGTGGTG CGCCAAGTTG TGTCGGGTAA ACCCCAATTG
GACATTCAAG AACCCTATCG TATTAACCCC CGTGGCAACC TCTATGCGCT CACCTGTGTT
AATAATGTGT TTGATGTGCA GAGTGTGCAT TGGCGGGGTA TTGGTCGGGT GCCAGACTCG
GGCTACGCCC TACGTGAAGC TTGGCACCAT CGAGATGCCC GCAAACGTTT TCACGCCCTG
GCAACCTTTC AGCCTGAGAT GGGCGATATG CCCAACGACT GTCTTTGTGC CTCTATTGTT
ATGGGTAAGC AGAGCCCCCA TGACTGCTTG CGTTATGCCC ATGATTGCCA GCCGGATAAT
CCCGTGGGTC CCTGTATGGC CTCGGTGGAT GGGGCTTGCC GCATCATGTG GGAACGCCAA
CATAGTGAGC TATTGGATTA G
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| Protein sequence | MDQASMEQKL LALTRLQVSE PIKVMNLCGG FARFWAESDW HQSLSRVVHI MPGPGCPVCV
CPEAEIRAAM HLAVREDVIL AAFGDMLSVP ISYGAAGYAT LDGARQDGAD VVAVANPHEA
VELALRHPTR EVVFFASGFE TVSAPLAAQF LAGVPDNFSI LNALRLSWPV VDTMLSQHER
RPFKAIIAPG HVAAIVGSEC WRFAVTQYGI PVSISGFSDR SFLASLDTVV RQVVSGKPQL
DIQEPYRINP RGNLYALTCV NNVFDVQSVH WRGIGRVPDS GYALREAWHH RDARKRFHAL
ATFQPEMGDM PNDCLCASIV MGKQSPHDCL RYAHDCQPDN PVGPCMASVD GACRIMWERQ
HSELLD
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