| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0831 |
|---|
| Symbol | |
|---|
| ID | 4480868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1035678 |
|---|
| End bp | 1036229 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639721575 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_864756 |
|---|
| Protein GI | 117924139 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1476] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000078794 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.173113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAACA ATTTAGCGGG CATGCGAATT CGTCAGCTAC GTTCTCAGCG CAAATTAACA
CAGCAAGCCT TGGCAGATAT GGCAGAAATT CCCCGCGCTA CCCTGGCAAC GGTGGAGAAA
GATGACGCCA ATCCCTCCCT AGCGGTGGTC TATAAGATAG CCCGGGCATT GGGTTTAAGC
ATTGATCAAT TATTGGTGAC AGAGCGAGAG CGCATCCAGG TGGTACCGGC GGACCAGATG
CGCTGGGTGG AGACCGCCGA TGGCCGTTAC CGTGCCGTGG TGGTTTCACC GGGCAATGCG
CTGCATTTTT TCCAGCAGAT TTTCTCGTTA CAAGCAGGCG CGGTTTATGA GGGGCGGCCC
CATCCTCCAG GCAGTGAAGA GTACCTGCAT GTGCTGGAGG GGGCGTTGGA ATTAGAACTG
GCTGGCGAGT GTAAGCGGCT GGTTAAAGGC GATAGCGCAC GTTTTGGGGG AAATGTACTA
CACCAGTACC GTAACCCCAC AGAGCAGACA GTGCGCTGCT TGGTGACCAT TCTAGAAGCG
GTTGGTAAAT AG
|
|---|
| Protein sequence | MVNNLAGMRI RQLRSQRKLT QQALADMAEI PRATLATVEK DDANPSLAVV YKIARALGLS
IDQLLVTERE RIQVVPADQM RWVETADGRY RAVVVSPGNA LHFFQQIFSL QAGAVYEGRP
HPPGSEEYLH VLEGALELEL AGECKRLVKG DSARFGGNVL HQYRNPTEQT VRCLVTILEA
VGK
|
|---|
| |