| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0805 |
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| Symbol | |
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| ID | 4482154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 1004964 |
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| End bp | 1007015 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639721548 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_864730 |
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| Protein GI | 117924113 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.469743 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGGAA AAAGTAACAT GGCCGAGGAT ACCAAACGCG AAGACATGAA AAAGCTCATC
GCCCGTGGCA AAGAGCGGGG ATTTTTGACC TATGATGAGG TCAACGATGT GCTACCCAAT
GACATGACCT CTGCGGAGGA TATGGAAGAT GTTGTTGGTC TCCTAGACAA CATGGGCATC
GATCTTATTG ATGATGAACG AGAAGAAGGG GCGCGTCCGA AGAGCCGCCC AGCAGCCGGT
ATCGGCAATC TCGACAGTCT AGATGACGAT GTTGATGAGG AGATTCTTGG CATCTCCGAC
TTTGATAGCG AGGATGATGA GAGTGACGAT GAAGATGGCC TGCGCAGTGA TGGTGCCATC
GAAGATATCG ACTTAGGCAA GACTGATGAT CCTGTACGCA TGTATTTGCG TGAGATGGGC
TCCGTTGAGT TGCTGACCCG TGAGGGTGAG ATCGCCATTG CCAAGCGAAT TGAGGAAGGC
TGCAATGAGG TGATTGCCAC CATCTGCGAT GCACCTTCCA CGTTTAACGA AGTGATGATG
CTGGCTGAGC GGTTGCGGGC CGGTGAGATT TCACTGCGGG AGGTGCTGGA CATCTCCACG
CCCCAAGATG AGGGGAGTGA GGACGAGGAT CTCAACAACG ACGATGATGA GGTTGAGGCC
AGCACCGAGA GCGATGATGA AGATGTGGAT GAGGATGATA TCGTCAACGG GCCTGTCAAG
GTGCGCAATC CGGTACCAGA GCCTCCCCCG GTTAAGACCG AGGAGGAGAT TGCGGCCCAG
CGGGAGGCGG ATAATGAGCA ATTTCGTGAG CTTTACGAGG CCACATTAGC CATCTTTGAC
GAAATTACCC GTGAAAATGA GGTATTGGTA GAGCTGCGGG ATCCGCTGAA CGATGCTTTG
CAGAATGATC CTGAGGGGGA AACCTGCAAA CGGCTGCTGG CGGAGTATCA AGCGCACAAG
GCACGGATTG TGGAGATTGT CGCGGGCATT AAGTTTTCGC CCAAGCAGCG GGATCGGCTG
GTTGAGCGCA TTAAGAGCTA CGTGGCTGCG GTGCGCGCGC AGGAGCAGAA GATTATCACC
ATTGTGACCC AGTGTAATGT CAAAAAGCCC GAGTTTATTG AGCAGTTTAC GGGCAATGAG
AGTGACACGA CCTGGATACA AAACTTTGCC AAGACGCGCA GTGCACCGTG GAAGCGGCTT
TATGAGCAGT CTGAGCTCAT CTGCGAAGCG CAGTTGGTTA TTCGCAGCAT TGAGGAAGAG
GCTGGTCAAA CGGTTGCGGA TTTGAAAAAG TGCAACAAGA AGTTGATGGA TGGTGAGCGG
CGTGCCAATC AGGCCAAGAA GGAGATGGTG GAAGCCAACT TGCGTCTGGT GATTTCCATT
GCCAAGAAGT ATACCAACCG GGGTTTGCAA TTTTTGGATT TAATCCAAGA GGGCAACATT
GGTTTGATGA AGGCGGTGGA TAAGTTTGAG TGGCGTCGGG GTTACAAGTT TTCTACCTAT
GCTACGTGGT GGATTCGTCA GGCGATTACC CGTTCTATTG CGGATCAGGC GCGCACCATA
CGTATTCCGG TGCATATGAT TGAGACCATT AACAAGCTGG TACGCACCAG CCGTCAGATG
GTGCAGGAGA TGGGCCGCGA GCCCACGCCG GAAGAGATTG CTGAGCGCAT GAGCATGAGT
TTGGAGAAGG TGCGCAAGGT ATTGAAGATT GCCAAGGAGC CGATCTCTTT GGAGACACCT
GTAGGGGATG AAGAGGACTC CCATTTGGGA GACTTCATTG AGGACAAGTC CATGCTATCG
CCATCGGAGC ATGCGATTAT GTCTAATTTG CGGGATACGA CGGGGCGGGT ATTGCAGACG
TTGACCAGTC GCGAGGAGCA TGTTTTGCGC ATGCGCTTTG GTATTGGTCT GCCGACGGAT
CACACGTTGG AGGAGGTGGG TAAGCAGTTT AATGTTACCC GTGAGCGTAT TCGTCAAATT
GAGGCTAAAG CACTTCGCAA GTTGCGTCAT CCGACGCGTT CGCGTAAACT GCGCAGCTTC
TTGGAGTCAT AA
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| Protein sequence | MDGKSNMAED TKREDMKKLI ARGKERGFLT YDEVNDVLPN DMTSAEDMED VVGLLDNMGI
DLIDDEREEG ARPKSRPAAG IGNLDSLDDD VDEEILGISD FDSEDDESDD EDGLRSDGAI
EDIDLGKTDD PVRMYLREMG SVELLTREGE IAIAKRIEEG CNEVIATICD APSTFNEVMM
LAERLRAGEI SLREVLDIST PQDEGSEDED LNNDDDEVEA STESDDEDVD EDDIVNGPVK
VRNPVPEPPP VKTEEEIAAQ READNEQFRE LYEATLAIFD EITRENEVLV ELRDPLNDAL
QNDPEGETCK RLLAEYQAHK ARIVEIVAGI KFSPKQRDRL VERIKSYVAA VRAQEQKIIT
IVTQCNVKKP EFIEQFTGNE SDTTWIQNFA KTRSAPWKRL YEQSELICEA QLVIRSIEEE
AGQTVADLKK CNKKLMDGER RANQAKKEMV EANLRLVISI AKKYTNRGLQ FLDLIQEGNI
GLMKAVDKFE WRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI NKLVRTSRQM
VQEMGREPTP EEIAERMSMS LEKVRKVLKI AKEPISLETP VGDEEDSHLG DFIEDKSMLS
PSEHAIMSNL RDTTGRVLQT LTSREEHVLR MRFGIGLPTD HTLEEVGKQF NVTRERIRQI
EAKALRKLRH PTRSRKLRSF LES
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