| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0421 |
|---|
| Symbol | |
|---|
| ID | 4483908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 500425 |
|---|
| End bp | 504396 |
|---|
| Gene Length | 3972 bp |
|---|
| Protein Length | 1323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639721169 |
|---|
| Product | cadherin |
|---|
| Protein accession | YP_864353 |
|---|
| Protein GI | 117923736 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.859378 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACC ATAAATCTAC CCATCGCAGA ACGGCTTTGG GCCTGCTGGC TCTGGAGCCC
CGCTGGATGT TCGACGGTGC CGGTGCCATA GATGCCACCC ATGCAAGCCA AGATGCCACC
GTAGATACAC AAGATGCCAC CATGTATGTA AGCGTGCCCG AGGTACCGGG GGCCGTCGCC
ACGCCGCCGA TCCGGGTGTT GCTGGTAGCC TCCAATGTGG CCGATGGTGA CGATTTGGCG
GCGGCTGCTC AAGAGGGGGT TGTGGTTGTG CGCTATGACG CGTTTAACGA CAGTGGCGCG
GCTATCCTGG AAAAAATTGC GCAAGCGTTA GATGGGCGAG AGGCAGACAG TATCGCTTTT
GCCACCCACA ACGCCGGGAC CGGGGCACTG GACATCACAG AGGCACTGCC CATGGACTTG
GCAAGCCTTG CCGCCAATGG CGAGGCACGG GCATTCTGGA CGGAAATCGG CACGATGCTC
AACCAGGACG GGCATATTGA CCTGCTGGGC TGCGAGGTGG CAGGCTCCGT CCAGGGCGAT
ATGCTGGTAT CGCTCATATC GGACATCGCC GGACGAGCGG TGGCCGCCTC TGACGATGCC
ACCGGCAACG CCGCCAGCGG TGGCGATTGG GTACTGGAGC GGGGCAATGT GGACGCCGCC
ACCACCTACT TTGATGGGGA ACGCTTGCAA GACTTTACCG GTCTGCTGCG TGGAATTGAG
TTGTGGAGCA CAGACGGGAC CTCGGACGGC ACCCAATTGG TCAAGGATAT TACCGGAACA
TCTGGAGATA GTTATCCCAC CCCTATTGAG GGAACCTCCG AACGTGACTC CACGGTGTCG
CGATCCTTTA CCGTCATGGG TGGCTACCTC TATTTTCAAG CGATCGATGG TTCCCACGGC
TCCGAGTTGT GGCGCACGAA CGGCACAACG GCTGGGACTA CGTTGGTTAA GGATATTAAT
CCTGGTTCCA ACAGTAGCTC CATTCAATAT GCCGTGGTCT GCAATGACAT TCTCTATTTT
TCCGCGAACG ATGGCAGTGG TGCGGCACTG TGGCGTTCGG ATGGAACTTC CAGTGGTACG
GTTAAGGTCA CAGCCGCGAC CACGGCGGGC ATCACCAATC CAGTTGCCCT TACCGTTTTG
TCGGGCAAGG TCTATTTTAT TGGTGACGTT CCCTTTCAGG GATCAGAGCT GTGTGTTTAC
GACCCGGTTG GTAACACCGC CTCGGCCGTA ACCGATATTT TTCCTGGCTC AACGGGTGGT
GTTTCTGCTT TGGAGAATCT GGGCACCCAA CTTGTGCTGG CGGCGAAGGA TAGCAATAGC
AATGGTTTAG AGGTTTGGGT CAGCGACGGC ACAGCCGCCG GTACCACGCT GGTGAAGGAT
GTCAGGCCCG GTCCCAGCAG CGGTTTGACG CTCTACACCC CCTACCAATT TTTTACGGTG
ATCAACGGTA AGGCTTACTT CGCGGCCAGT GATGGTAGCC ACGGAATCGA ACCCTGGGTA
ACAAACGGCA CAGCAGATGG GACCGTCATG CTGGCCGATG TTAACGCAGG TGGTGACAGC
AGCCCGCTAA ATTTTACTGC CGTGGGTGGG GATGTCTATT TTACCGCCTA TGATGGCACC
GCCAGTCAAA TTCTAACAAC CAGCGGGACC TTTGCCAGTA CCGTTTCGGT CGCCGGTGGT
TTTAATAGTA CACCACAATT CCTGATCGGC ATGAACGGTA TTCTCTATTT CTCATCGAGC
AACACCGACT TCAATGAAGA ATTCTACTTT TCAGATGGAG CGTCAGCAGG AGTTGTAAAG
AATATCAATA TCTATGGCAG CGGCAATGAT AAATTTTATT ATCCAGCTGT GTACAATAAC
AATTTGTATT TCCGTGCGCA AGATGGATTG ACTGGTAATG AGCTTTGGCG CAGTGACGGC
ACCTCGGCTG GTACCACGCA GGTCAAAAAT ATCCATAGCG GTGGCTACAG CTCATCTCCC
CAATATTTAA CGGTTTTCAA CGGTAAGCTC TATTTCAGTG GCAGAACCAC CAGTCAGAGT
GAGGACAACT ATTACGGCCC GATCTTCTCT TCCTCGGGGA ATGCCGTGTT TAGCGAGAAC
GGCGGCGGCA CGGTATTCAC AGCCTACGCC AATGCCGACG GCGAGGTCAT CTTCACACTT
GGCGGGGCAG ACGCCGACAA GTTTGATATT AACGCCGCGA CGGGTGTGGT GACTTTTAAG
TCGATACCCG ATTACGAGAC ACCAGCCAGT GCCGCTGGAT CCAACTATTA CGAACTCACC
ATCACCGCTA CGGATACGAG CGGCAGCATG GATAAGGCGT TACAGGTTTT GGTCCATAAC
GTTGCTCCCA TCTGGTCACA AAGCGCTGTG GAGGTTGCGG ATACCAGTGC GAACGGTACC
TCGGTAGCGA CGCCGAGCAG TACCGGTGAC ACCACCAGTG TTACATGGTC CATCCAGGGT
GGCAACGCCA GCGGTCTGTT TGCGATCAAT GCCAGCACTG GCGCGATCAC CATCGCCGAT
GCCACCAAGT TTGACCATGC CACCACACCG AGCTACACCC TCTCGGTGCG GGCAAGCGAT
GGTACCACCA ACACCGACCA TGACATCACG GTCACCGTCA CCCATGTGAC GCCGGGGCCG
ACCTTTACCT CTGGAGCAAC GGCCACCTTC GCCGAAAACG GCACGGGTAT CGTCTACACG
GCGGCGGCCA CCACCAGCGG TGGCACGGTT AGTTATGCCA TTGGCGGCAC GGATGGTGCC
AAATTCAATA TTGACGGAAG CTCTGGGGCA GTCACCTTCA AGGCTGCGCC TGATTTCGAG
GCATTGGCCA GCGCGGCCAG CTCCAACGCC TATACCGTCA CCCTCAGCGC CACCGATGAC
AACGGTACCC ACACCCAGGA TGTGGTGATT ACAGTAACCG ACGCTGCCCC CGCCTGGACA
GCCCTTGCTC CCGTCAGCCT GAATGATAAC AGCACCGCTG GAGCCGTTGT GGCCACACCG
GTGGCAACGG GAGATAACAG CGGGGTCACA TGGTCGATCC AAAGTGGCAA TGCCAGCGGG
CTGTTTGCCA TTAACGCGGC CACCGGTGTC ATCACAGTGG CCGATGCCAG CAAGTTTGAT
TTTAGCAACA CACCCTTCTA TACCCTGAGC GTGCGAGCCA CCGACGGCAA TACCAGTGCC
GACCATAACT TAGTGGTGGC GGTGGTGCAT GTACCGTCAC CGACCTCTGC GGCACAGCCA
TTGCCCGCAC CACCCGCACC ACCCGCACCA CCATCCGCCC CGCCGCCGGT GGTGGTGGCT
CCAGTGGGGG AGAGCACCGT GACCGTGCTT CGCGACAACG CGCCGTCCCA ATCTTTTATA
CCCTTACCTG CGGTTTCGCT ACGTGCTACC CCACCAGCCG CGAGCGACGC TGCACGCACG
GCCCCGGCGG CGCTCCCGGC CTCGGCGGCC TCGGTCGTCC CGGTGGTGAT GACAGCACAA
TTTACCGTAT CTACAGAATT AGGTGGTTTT CGGGTGCCTG TGGTCACCGC TAGCCAAGGG
GGGCCTGCGG TAGAAGGTCT CATTGCGCTG CACCCCGAGA TTTTGGCGCC AGACATGGTC
GATGATGTGG TGCGGGTCTC TTTGCCGGCG GATGCCTTTG CCCATACCCG CACTGATGCG
GTTGTGGTGC TAACCGCTGC CCGCATTAAC GGTCAACCGC TTCCTTCGTG GCTTAATTTT
GATTCTCGTT CCGGCACCCT TAGCGGCTCC CCCCCAGCCG ACCTCAAAGG GACAACGGTG
GTAAAAATTA TCGCCCGTGA CAACCTCGGT AACGAGGCCA TCATCACCGT GCGCATCAAC
GGGCAGACGG AACGCTCTGG GGCGTTGCGC GATGCAGCGA CCCACAAGCT GGTAGAAACC
CTCACAGGTA AGCCCGCTTT TACCCAACAA CTCAAGGCCG CAGCCCGTCT GGCCGCGGTT
CGGTTCGGCT AA
|
|---|
| Protein sequence | MTDHKSTHRR TALGLLALEP RWMFDGAGAI DATHASQDAT VDTQDATMYV SVPEVPGAVA
TPPIRVLLVA SNVADGDDLA AAAQEGVVVV RYDAFNDSGA AILEKIAQAL DGREADSIAF
ATHNAGTGAL DITEALPMDL ASLAANGEAR AFWTEIGTML NQDGHIDLLG CEVAGSVQGD
MLVSLISDIA GRAVAASDDA TGNAASGGDW VLERGNVDAA TTYFDGERLQ DFTGLLRGIE
LWSTDGTSDG TQLVKDITGT SGDSYPTPIE GTSERDSTVS RSFTVMGGYL YFQAIDGSHG
SELWRTNGTT AGTTLVKDIN PGSNSSSIQY AVVCNDILYF SANDGSGAAL WRSDGTSSGT
VKVTAATTAG ITNPVALTVL SGKVYFIGDV PFQGSELCVY DPVGNTASAV TDIFPGSTGG
VSALENLGTQ LVLAAKDSNS NGLEVWVSDG TAAGTTLVKD VRPGPSSGLT LYTPYQFFTV
INGKAYFAAS DGSHGIEPWV TNGTADGTVM LADVNAGGDS SPLNFTAVGG DVYFTAYDGT
ASQILTTSGT FASTVSVAGG FNSTPQFLIG MNGILYFSSS NTDFNEEFYF SDGASAGVVK
NINIYGSGND KFYYPAVYNN NLYFRAQDGL TGNELWRSDG TSAGTTQVKN IHSGGYSSSP
QYLTVFNGKL YFSGRTTSQS EDNYYGPIFS SSGNAVFSEN GGGTVFTAYA NADGEVIFTL
GGADADKFDI NAATGVVTFK SIPDYETPAS AAGSNYYELT ITATDTSGSM DKALQVLVHN
VAPIWSQSAV EVADTSANGT SVATPSSTGD TTSVTWSIQG GNASGLFAIN ASTGAITIAD
ATKFDHATTP SYTLSVRASD GTTNTDHDIT VTVTHVTPGP TFTSGATATF AENGTGIVYT
AAATTSGGTV SYAIGGTDGA KFNIDGSSGA VTFKAAPDFE ALASAASSNA YTVTLSATDD
NGTHTQDVVI TVTDAAPAWT ALAPVSLNDN STAGAVVATP VATGDNSGVT WSIQSGNASG
LFAINAATGV ITVADASKFD FSNTPFYTLS VRATDGNTSA DHNLVVAVVH VPSPTSAAQP
LPAPPAPPAP PSAPPPVVVA PVGESTVTVL RDNAPSQSFI PLPAVSLRAT PPAASDAART
APAALPASAA SVVPVVMTAQ FTVSTELGGF RVPVVTASQG GPAVEGLIAL HPEILAPDMV
DDVVRVSLPA DAFAHTRTDA VVVLTAARIN GQPLPSWLNF DSRSGTLSGS PPADLKGTTV
VKIIARDNLG NEAIITVRIN GQTERSGALR DAATHKLVET LTGKPAFTQQ LKAAARLAAV
RFG
|
|---|
| |