| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4264 |
|---|
| Symbol | |
|---|
| ID | 4475988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008573 |
|---|
| Strand | - |
|---|
| Start bp | 139489 |
|---|
| End bp | 141363 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639720621 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_863779 |
|---|
| Protein GI | 117676203 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000613459 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.436086 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA GCATCGAGAC TAACGGCTTA TTCATGGAGA ACATGTATAG GCCGATTTAT
GAAATCCAAT CCAGTTATGC TTGGGCTGGA GCCTCCTTGT TCACGGCAGG CTCGTGGGTA
TACCACGGGG TAAGTGGACA CGATGTATCG ATGGTCGCAG TTTCGGTTAT AGCGGCCACA
GCAGGTATGT CGGTTAAGCG CTTAAAAGAA GCCTTACCGC AAATACGTCG CCAGATTAAG
TTGGTATATA ACTATCAATA CCTCATTGAA TCTAGCGCTT TGTGGGAGCT GAGCAAAACC
CAGAGGGATA AGGCCTTCTT TGGTCGCGGC TTTGAGTGGA CGATCACCGA AGCAAACCGA
GCTTATCAGC TGGTGGGTAA ACGCCCAGAA CACGCTAAGG GTTTCTTGCC TTGGGCAGTG
CGAAGAGCAC TGAAGAAAGT CGAAGCAGAT ACCGAGAAAT TAGAAGGTCG GCCGTGGATT
CAGGGGTGTG GTGACGAGCA GGATTTGTGG CTGGATGCGT CGCTATTCTG GTCTCACAGT
TTCTACACCG GATTACCAGG TGCGGGTAAA ACAACGATGT TAACGCTTAA CAGTGTTGGC
GCCCTTTACC GTGGTAACTC TGTATTAGTG TTAGACCCTA AGAACGATCC AAACTGGAAG
AACAGATTAC GCGCAGAAGC GAAGCGTTTA GGCGTCCCGT TTTATTACTT CAACATTGCT
GAGCCAAGTC AGTCGGTGCG TATCGACCCA CTGGTGAACT TTACAGTGAC GACCGAGATT
GCATCGCGCT TAGCTAACGT CCTAGAAAAA GGTTCAGGAA GCTCTGAGGG TTTTCGCTCC
TATGCCTGGG ACTCATTCTA CGTCACGGCT GAAGCATTAC GTTTTATCGG TAAGCGACCA
TCAATCAAGA TGGTCGCTGA TTACATGCTA AACCGCAAAA GCGAATTAGC CCTAGCAGCC
TTAAGCAAGA TTATGACTAT GCATTACGGG CCAGATTGGT ACGCGAACAT GGCGACCCAA
ATTGCCGAGG AAGGCCGCGG CAGTTTGCTA CAGGGTTTAA TCATGCGCTA CCAACAGGTG
TTAATCCCTG ACGACAAAGG TGAAGACGCG GTATCGAGTT TTATTGGTTT CTTAACGCAC
GACCAATCTC ACCAAAGTAA GATGTTAGCG ACCACCAAGC CGATGTTAAC CCAGTTAACC
GCTGCGCCGC TGGACAAGAT GTTAAGCCCT GACCCGAATG ATACGGAAGA CGAGCGTCCT
ATTATCGACA TCAAGAAATT CATTGATACG GGCGGCGTGT TGTACATCGC CACCGATTCA
TCGGGTAATC CTGCAATTTC AGCAGCTACA TCGAAACTCA TTATGGAGGA TACCTGCGCG
GCAGCTGCTT CACGTTACAA CTACGAAGGC GGAAAAGGGG TGCGTGTGTC GGTGTTTGGT
GACGAAATCC ACTCTGCACT CTCCGACGGC CTAATTAACT TAGCAGCGAT GGGTCGTGGT
GCAGGCTTTG AATTGCACCT ATCTACGCAG GGTGTTCCCG ATTTGATTGA TAAAGCCGGT
GAAGCAGTAG CGAGCCGGGT CCTGTCTTTA ACCGCTAACT GGTTCTGTCT GCGAGCTCGA
GATGATATCA CCAGGGAGCG ATTTGCGGCG CTACTCCCGG AGTATCCAAT TAAGTCAAAG
CAATGGCAGT TAAGCTCTAA CACCGATTCG ACCAGTAAGC TCCATAACTT CTCGGGCTCG
GTGGGTGAGC GGATTATGGA AGCTGACAAG CCAGCGTACC CTCTTTCATT GATGTCGGAA
TTACCTAAGT TGCAGTACGT CGCACGTCTG GCCAACGGTA AGACCTATCA ATGTCGTATT
CCGATTTTAC TGTAG
|
|---|
| Protein sequence | MSKSIETNGL FMENMYRPIY EIQSSYAWAG ASLFTAGSWV YHGVSGHDVS MVAVSVIAAT
AGMSVKRLKE ALPQIRRQIK LVYNYQYLIE SSALWELSKT QRDKAFFGRG FEWTITEANR
AYQLVGKRPE HAKGFLPWAV RRALKKVEAD TEKLEGRPWI QGCGDEQDLW LDASLFWSHS
FYTGLPGAGK TTMLTLNSVG ALYRGNSVLV LDPKNDPNWK NRLRAEAKRL GVPFYYFNIA
EPSQSVRIDP LVNFTVTTEI ASRLANVLEK GSGSSEGFRS YAWDSFYVTA EALRFIGKRP
SIKMVADYML NRKSELALAA LSKIMTMHYG PDWYANMATQ IAEEGRGSLL QGLIMRYQQV
LIPDDKGEDA VSSFIGFLTH DQSHQSKMLA TTKPMLTQLT AAPLDKMLSP DPNDTEDERP
IIDIKKFIDT GGVLYIATDS SGNPAISAAT SKLIMEDTCA AAASRYNYEG GKGVRVSVFG
DEIHSALSDG LINLAAMGRG AGFELHLSTQ GVPDLIDKAG EAVASRVLSL TANWFCLRAR
DDITRERFAA LLPEYPIKSK QWQLSSNTDS TSKLHNFSGS VGERIMEADK PAYPLSLMSE
LPKLQYVARL ANGKTYQCRI PILL
|
|---|
| |