| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2996 |
|---|
| Symbol | |
|---|
| ID | 4458686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 3700516 |
|---|
| End bp | 3701880 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639703768 |
|---|
| Product | signal recognition particle protein |
|---|
| Protein accession | YP_847105 |
|---|
| Protein GI | 116750418 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0541] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000641047 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.948328 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGACA ATCTGTCGGA TAAGTTTCAA CGAATTTTTA AGAATCTGCG CGGCCAGGGA
AAACTGACCG AGGAGAATAT TCGGGAGGCC TTGCGAGAGG TCCGGATGGC GCTCCTGGAA
GCCGACGTCC ACTACAAAGT GGCCAAGGAT TTCGTGACCG GGATCGCGGA GCGCGCGGTC
GGCCAGGAGG TGATGACCAG TCTCACGCCG GGCCAGCAGG TGATCAAGAT CGTCAACGAG
GCGCTGACCG ACCTCATGGG CGGGCAGTCC GAACCGCTTC GCCTGATCGG AAAACCTCCG
GTCTGCCTGC TCATGGTGGG GCTTCAGGGC TCCGGGAAGA CGACCACCAC CGCAAAGCTT
GCCCGAAAGC TCGTGCAGGA GCACCGGAAG CCCTGCCTGG TGCCCGCCGA CGTCTATCGA
CCGGCCGCCA TCGAGCAACT GGTGACTCTG GCGGGACAGA TCAACCTGCC GGTGTATCCC
TCGACGGTCC GTCAAAAGCC CGAGGAGATC GCCCGGGAAG CCCAGGGTTA CGCCCGGGAG
CACAACTGCG ATACGCTGAT TGTGGATACC GCCGGACGGC TGCACATCGA CACGGAACTC
ATGGGCGAAC TCGGCCGTTT GAAGGAGATT CTGCAGCCGG CGGAAATCCT CCTGGTGGCT
GACGCCATGA CCGGCCAGGA CGCGGTCCAG GTGGCGAGCG CGTTTCATGA AACACTCGGT
CTCAGCGGGG TGATCCTGAC CAAGCTCGAC GGCGACGCCC GCGGAGGCGC CGCTCTGTCC
ATCCGGGCCG TGACGCGGTG CCCGATCAAG TTCATCGGAC TTGGCGAAAA GCTGGATGCC
CTGGAAGTCT TCCATCCCGA CCGGATGAGC TCGCGGATAC TGGGGATGGG AGATGTGCTG
TCGATGATCG AGAAGGCCCA GGAGGCCTTC GATGAAAAAG AAGCCCTGGC AATGGCGAAG
AAATTCCGGG AGGATACCTT CTCTCTGGAA GATTTTCGCA ACCAGTTGCG CCAGGTGAAG
AAACTGGGGT CCCTGGAACA GATCCTCGGG ATGCTCCCGG GCATGGGAAA GCTCAAGGAG
CTGAAGAAAC TGCAGGTGGA CGAGAAGGAG TTCGTCCGCA TGGAAGCGAT CATCAATTCC
ATGACCCGGG GCGAGCGCAG GAATGCGGAC ATCATCAATG CCGGCCGTCG CAAGCGTATT
GCCGACGGCA GCGGAACATC GGTCCAGGAG GTGAACCGGC TGCTCAAGAG CTACTCGGAA
GCCCGGCGCA TGATGCGGCA GATGATGGGC GGCGGGGGTT CCGCTCCGGC GACCAGGAAG
AAGAAAGGGA AGGGAAAGCA CAAGAGAGCA TTTTTTCCTT TTTAA
|
|---|
| Protein sequence | MFDNLSDKFQ RIFKNLRGQG KLTEENIREA LREVRMALLE ADVHYKVAKD FVTGIAERAV
GQEVMTSLTP GQQVIKIVNE ALTDLMGGQS EPLRLIGKPP VCLLMVGLQG SGKTTTTAKL
ARKLVQEHRK PCLVPADVYR PAAIEQLVTL AGQINLPVYP STVRQKPEEI AREAQGYARE
HNCDTLIVDT AGRLHIDTEL MGELGRLKEI LQPAEILLVA DAMTGQDAVQ VASAFHETLG
LSGVILTKLD GDARGGAALS IRAVTRCPIK FIGLGEKLDA LEVFHPDRMS SRILGMGDVL
SMIEKAQEAF DEKEALAMAK KFREDTFSLE DFRNQLRQVK KLGSLEQILG MLPGMGKLKE
LKKLQVDEKE FVRMEAIINS MTRGERRNAD IINAGRRKRI ADGSGTSVQE VNRLLKSYSE
ARRMMRQMMG GGGSAPATRK KKGKGKHKRA FFPF
|
|---|
| |