| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2880 |
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| Symbol | |
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| ID | 4458777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 3557673 |
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| End bp | 3559157 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639703654 |
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| Product | spermidine synthase |
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| Protein accession | YP_846992 |
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| Protein GI | 116750305 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.548533 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGACA TTGGATTGAT TTTCATTTCG ATTTTCGCGG CTGGAATCGT CTCTCTTCTT
TTGGAGCTTT CGCTGTTGCG TGAGTTCATT TACATCTTCG GATCGACGGC GGTGTCTAAC
GCCATCATCA TTTCCGTGTT CCTGGTCGGA CTGGCGTTCG GCGCCTACCT CGGCACCTGG
CGGAAGCTCG GCGTCAGGGA TGAAAACGAT GCCCGGCGCA GGTTCGCCTT CATTCAACTG
CTCAGCATCC TGTTCATCAT CCTGTTCTTC CTTTCGAAAA AATACTTTAT CTATCATTCG
CACCATCAGA ATCTGGTGCG GTTTTACTTC ATCGTGTCCG TTTTCGCCCC GTCGCTCCTG
TCAGGACTGG CCTATGCCAT CAGTGTCAAG ATCATGCACT GGCGAGGCGA GAAATACATC
ACTTACATCT ATGCTTTCAG CACCCTCGGC AGCGTCATCG GAGGACTCGC CCACGGCATC
GTGCTCGTTC CCCTGTGGGG TATTCGATCG GCCTACATCT GTGCCGTGCT GTTCGCCGGC
GTGGCGCTGT ACACGATGTA TCCGTTGATG AGCATGATGC GGAAGTTCGT CACGGCGGCT
GTGGTTGTTT TGGCGGTGGC AGCGATCCAC CTCGACTTTG CCGATGTGCT GTTCCCTTCC
GAGAGTATCG TCTTCAGCAA GGACAGTGAA TTCGGCATCG TGGAAGTCTG GAAACTCAAC
GAGGCTGACG CCAGGACCAA GCATCTCGTC CTCGGCGGCA GCGACGGAGA CTTCCGACTC
GACGAGCCGC CCATCGACCT CAAAGTCAAC AACATCCACC AGAGCTACAA TCTTCCCATC
GACCGGCTCA TCCACGAACA ATGGGCGCAG ACCAGCCTGG GCATCGTGAA CCGCGTGTCC
AACGTGCTCC TGCTGGGCTA CGGCAGCGGG GTGACGGCGG CCGCCTATCT AAGGTCCCCC
ATGGTCGGAA AGTTGGACAT CGTCGAGAAC TGCATGCCCG TGATCGAGGC GGCGGAGATG
TTCTTCCCCC GCGAATACGA GCTGGCCTCA CAATCGAAGA AGAGCAATTT CATCGTTGAT
GATTTCCGCG GGTTCGTGAG GTTCACCAAA GAGCGGTATG ACATCATCGC CCTGGACCAT
TCCATTGAAG ACCCTTATGC CATCGGGTTC TTCACTCTGG AGTTCTTCGA TCAGCTCAAG
CGCATCACCA GGCCGGGCGG CGTGGTCCTG CTCCTGGGAA AAGGAACGTC CTGGAACACA
ACCCGGTTGT CGTTCAAGCA CGTTTACAGG AACATCAATC CGCGCATCAA CAGCTGGTTG
CGGAAAGGCT GCCTGTACCT CGCCCAGGAA GAATTCCAGG GCGTGGCGGC CGGCAACTAT
GAGGCGGTCC GGGATGGTCT CTCGGCGGAG GAGCCGGTGT ATTCGGACGA GGAGGTCCAG
CAGTTGGCGG AATATCAGGA GGATCACGGA AAAGCGCTCG ACTAG
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| Protein sequence | MKDIGLIFIS IFAAGIVSLL LELSLLREFI YIFGSTAVSN AIIISVFLVG LAFGAYLGTW
RKLGVRDEND ARRRFAFIQL LSILFIILFF LSKKYFIYHS HHQNLVRFYF IVSVFAPSLL
SGLAYAISVK IMHWRGEKYI TYIYAFSTLG SVIGGLAHGI VLVPLWGIRS AYICAVLFAG
VALYTMYPLM SMMRKFVTAA VVVLAVAAIH LDFADVLFPS ESIVFSKDSE FGIVEVWKLN
EADARTKHLV LGGSDGDFRL DEPPIDLKVN NIHQSYNLPI DRLIHEQWAQ TSLGIVNRVS
NVLLLGYGSG VTAAAYLRSP MVGKLDIVEN CMPVIEAAEM FFPREYELAS QSKKSNFIVD
DFRGFVRFTK ERYDIIALDH SIEDPYAIGF FTLEFFDQLK RITRPGGVVL LLGKGTSWNT
TRLSFKHVYR NINPRINSWL RKGCLYLAQE EFQGVAAGNY EAVRDGLSAE EPVYSDEEVQ
QLAEYQEDHG KALD
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