Gene Sfum_2560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2560 
Symbol 
ID4459141 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3161259 
End bp3162881 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content59% 
IMG OID639703326 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_846673 
Protein GI116749986 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.948735 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCGCCAGC ATCACGAACT CCAGATCCTC TTCGACATCT CTTCCGCACT TCACTATTCA 
CCGCACCTGC AGGACGTACT GCAGCGGGCA CTCATGAGCA TCCTCGGCAC GCTGAAGTTC
AAGATGGGGG CGATCTACCT TGCGCGGGAA ACCTCCGACG AGCAATGGCT GCTCGAATTG
GCCGCCCATC ACGGTTTCTC AGCCACTCTG TTGAATTGCA TCCAGTTTCT GTCGATACCC
ACCAACCTGA TGGACAAATA CCACCATCAG CAGCCGGTCC GCTGGTTCCC GGCCACCAAG
ATCACTTTCA CCGCGCTGCG GGAGCGCATG GAAGAGGAGG GAATCGAGGA AATCATCTGC
ATTTCGCTGA TGTCTCAAAA GAAGGTGCTC GGCCTGCTGT ACGTGACCAA TGACGGTGCC
CTTCAGCTCA AGCCGGACCG GAGCGAATTT CTGACGACCA TCGGCCAGCA GCTCGGCGTG
TCCATTCAGA ACGCCCAGTT GTTCGATTCG GTGGAGCGGG CCAAGAGCGA GCTCGAGATC
AGCTTTGACG CCATCCAGCA CAGCATCTTC CTGGTGGACC GGCGCATGAG AATATACCGG
GTCAACAGGA CGAGCGAGAT GGTTTACGGC AAGGTGGAAG ACCTTCTGGG GAAGAAGTAC
ACGCAGATCC TTTACGGCAA GGACCAGCCC CACCTGGAAT GCCCGATCTG GGCCTGCCTC
TGGGGCGGGC AGCCGGTGCA GCGCGAAGGG CCGCATCCTC GCTGGGGAGG CTACTATCAC
TACTACGCGT TTCCGGTCTT CAATCCGACG GGTTCCCTCG AGCGAGTTGT CTACTACGAA
AAAGACGCGA CGGAAGCCCG CAAGCTGGAG CAACGGCTGC AGCAGACGGA ACGGCTGAAG
GCGCTGGGGA CGCTGGCCGC CGGCATCGCC CACGAGATCC GCAACCCGTT GGCGACCATC
AATTTCAACA CCCAGATGCT GCAAAGGGAA CTGCATCTCG ACGCCGCGCA GCAGCAGATG
TTCGATGACG TGTTGAAGGA AATCCGGAAG ATGGACCGGA TTGTTCAGCA GGTGCTGCAT
TTTGCACGGC CCAGGGAACC CCAGTTCCAG CCCAACCAGC TCAACGAAGT GGTCCGCTAC
TGCATGGACA TGGCCAAGGC CTATCTTGTG AAGGCCAATG TGGTGGTCTG CCTCGACACG
AGCGACGGTC TCCCGTCCGT GGTCATGGAT TTCAGCCAGA TATGCCAGGT GGTGATGAAT
GTGATCATCA ACGCCATCGA GTCCATGCCC AATGGAGGAA ACCTCACCGT CGCCACCGAA
CGCCAGGCTG ACCCGCCTTC CCTGGTGCTG CAGGTGACCG ATACGGGAAC GGGCATCCTT
GAAGAAGACA AAGACCGGAT TTTTGATCCA TTCTTCACTC GAAAACCCGA GGGGACGGGG
ATGGGGCTGA GCATTTCACG GCAGATCCTG GAGAAACACG GCGCCTTTGT CGACGTCGAG
ACCGAACCGG GAAAAGGCAC GACCTTTCGA ATCATCTTCC CCCTCAAACC CGTGGTCCCC
CAGATAGAAC CCGCCCCTGA GCCGGGCGAC GCCATTATGG AGAGCAAGCC TGCGATCCAG
TGA
 
Protein sequence
MRQHHELQIL FDISSALHYS PHLQDVLQRA LMSILGTLKF KMGAIYLARE TSDEQWLLEL 
AAHHGFSATL LNCIQFLSIP TNLMDKYHHQ QPVRWFPATK ITFTALRERM EEEGIEEIIC
ISLMSQKKVL GLLYVTNDGA LQLKPDRSEF LTTIGQQLGV SIQNAQLFDS VERAKSELEI
SFDAIQHSIF LVDRRMRIYR VNRTSEMVYG KVEDLLGKKY TQILYGKDQP HLECPIWACL
WGGQPVQREG PHPRWGGYYH YYAFPVFNPT GSLERVVYYE KDATEARKLE QRLQQTERLK
ALGTLAAGIA HEIRNPLATI NFNTQMLQRE LHLDAAQQQM FDDVLKEIRK MDRIVQQVLH
FARPREPQFQ PNQLNEVVRY CMDMAKAYLV KANVVVCLDT SDGLPSVVMD FSQICQVVMN
VIINAIESMP NGGNLTVATE RQADPPSLVL QVTDTGTGIL EEDKDRIFDP FFTRKPEGTG
MGLSISRQIL EKHGAFVDVE TEPGKGTTFR IIFPLKPVVP QIEPAPEPGD AIMESKPAIQ