| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1302 |
|---|
| Symbol | |
|---|
| ID | 4461138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 1603373 |
|---|
| End bp | 1605334 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639702071 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_845429 |
|---|
| Protein GI | 116748742 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0226315 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.530799 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCA TCTCCCTGCA ACAAAGGTCC CTCACCGATG CGCAACGTGA AACCCTCCAC
CAGATGTGGC TCCGTTGCAT GCGCAGGATC ATTCTCAGCA CGACGCTCGC CGGGAGCGGG
CACCCGGGCG GCTCCATGTC GTCTCTGCAT TTGGTGCTCA TGCTTTACTG CACGCTCGAA
CACCGCCCGG ACGATCCCTG CTGGCCCGAA CGGGATCGGG TGGTCGTCAG CATGGGGCAT
ATCAGCCCGT GCGTCTACAG TGTGCTGGCC GAATTCGGGT ACACTCCCGA GGACAACTTC
ATCCTCGAAT TCCGGCAGGC GGGATCATCC TATGCGGGCC ATGTCGAATG CTGCGTGCCC
GGGGTCGAAT GGAATACGGG GAATCTCGGC CAGGGGTTGT CCGTCGGCGC GGGAATGGCC
CTCGGGCTCA AACTGAGAGG CAGCCGAGCC TCCACGTTCG TGCTCATGGG CGACGGGGAG
CAGCAGAAGG GGCAGATTGC CGAGGCACGG CGGTTTGCCG TCAAGTACGA GCTCAATGAC
CTGTGCTGCG TCATCGACCG GAACCACCTC CAGATCGGCG GAGACACGGA CTCGGTCATG
CCCCAGGAAA TCGAAGCGGA ATACGCCGCC TCCCAGTGGA ATACGATTCG TGTCGGGGAC
GGCCATAATT TCGACGAGAT CTTTCAGGCT CTCAGGCAAG TTCGCTCCAG CGAGGTGGAT
GATCCCCGGT ACCCTTCCGT TATCATAGCC GAAACGGTGA TGGGGAAGGG GGTTTCCTTC
ATGGAAAACA AGGCCAAGTA CCACGGATCG ACGCTCAAAG ACGATGAAGC GGCCGCAGCC
CTGAAAGAAC TGGGCCTCGA TAATCCGCTT CCGGCGCTCC GGGGAAGGCG TAAAACCCTG
CGCGTCTTCC ACGCCCCGTT TTGCCCGGCG CTCGATCACT CCAAAATCGA ACCCGGTCAG
CCCAAGACGT ACGCAATGGA TGTGACGACC GACTGCCGTT CGGCCTATGG GGCGGCCCTC
GAGGATCTGG CGCGACTCAA CAATGCGGGC GAACACCCGA GAATTCTGGG GTTCAGTTGC
GACCTGGAAG GATCGGTAAA GATGGACGCT TTTCACCGGC AAAATCCCGG ATGTTTCTTT
GAAGGAGGGA TCCAGGAACA CAACACCGCC ACGCTGGCGG GAGCGGCCAG CAAGGAAGGC
TTCGTGGTTT TTTTCAGCAC TTTCGGCGTG TTCGGCGTAT CCGAAGTTTA CAATCAGCAG
CGGCTCAACG ACATCAACCA CACCCATCTC AAGCTGGTTT GCACGCACCT GGGGCTCGAT
GTGGGAGAGG ACGGTCAGAC GCATCAGTGT ATCGATTACA TCGGCCTGGT GCAGAACCTC
TACGGGTTTT CAATCTTTAT GCCCGCGGAT CCCAACCAGA CGGACCGGAT TGTTCGGCAT
GTCGCCTCCC ATCCGGGGAA CCATTTTGTG GGGATGGGAA GGTCCAAGAT GGGCATCATT
TCGGACGAAT CCGGCAAGCC GTTTTTCGGG GGGGATTACC GGTTTGTGCC GGGGAAGGCG
GATTGGCTGC GGCGGGGCGG TCACGGCGCG ATACTGAGCT GCGGGCCGGT GGTGCACAAT
GCCCTCCGGG CGCGCGAAGA ATTGGCCGCG CGCCACGGCA TCGAGATGAG CGTCCTGAAC
CTGGCATCGA TCAAGCCGCT CGATGCCGAC GCCGTTTTGG AAGCCGCGGG TACCGGGTTC
GTGATCACAG CTGAAGACCA TCACATCGAC ACGGGCCTCG GCGCCAGGGT TTCGACCGTG
CTGGCCGAGG CGGGAGCGGC CTGTCGGATG ATCCGCCTCG GGGTTCGAAG CTACGGGCTT
TCCGGTCATC CCGAAGTTCT TTATCGCCTG GAAGGACTGG ACGCGGAAGG TATTGTCAAA
ACCGTGCTGC AAGCTCGCTC AGACGGCCGG ATAAGAGGTT GA
|
|---|
| Protein sequence | MFSISLQQRS LTDAQRETLH QMWLRCMRRI ILSTTLAGSG HPGGSMSSLH LVLMLYCTLE
HRPDDPCWPE RDRVVVSMGH ISPCVYSVLA EFGYTPEDNF ILEFRQAGSS YAGHVECCVP
GVEWNTGNLG QGLSVGAGMA LGLKLRGSRA STFVLMGDGE QQKGQIAEAR RFAVKYELND
LCCVIDRNHL QIGGDTDSVM PQEIEAEYAA SQWNTIRVGD GHNFDEIFQA LRQVRSSEVD
DPRYPSVIIA ETVMGKGVSF MENKAKYHGS TLKDDEAAAA LKELGLDNPL PALRGRRKTL
RVFHAPFCPA LDHSKIEPGQ PKTYAMDVTT DCRSAYGAAL EDLARLNNAG EHPRILGFSC
DLEGSVKMDA FHRQNPGCFF EGGIQEHNTA TLAGAASKEG FVVFFSTFGV FGVSEVYNQQ
RLNDINHTHL KLVCTHLGLD VGEDGQTHQC IDYIGLVQNL YGFSIFMPAD PNQTDRIVRH
VASHPGNHFV GMGRSKMGII SDESGKPFFG GDYRFVPGKA DWLRRGGHGA ILSCGPVVHN
ALRAREELAA RHGIEMSVLN LASIKPLDAD AVLEAAGTGF VITAEDHHID TGLGARVSTV
LAEAGAACRM IRLGVRSYGL SGHPEVLYRL EGLDAEGIVK TVLQARSDGR IRG
|
|---|
| |