| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1238 |
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| Symbol | secF |
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| ID | 4461363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 1532771 |
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| End bp | 1533826 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639702006 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_845365 |
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| Protein GI | 116748678 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAACTGA TCAAGCCCGG TATCAATCTG AATTTTGTGG GGATGCGCTA CAAAGCGTTC
CTTGCGTCCG TCGTCGTTCT CTTGATCGGA TTGGCGGCGT TCTACTTGAA AGGCCTGAAC
ATGGGCGTCG ACTTTGCCGG CGGAACCCTG CTCCAGGTGA AATTCAGCCA GCCCACAAAC
CCGGACGCGA TTCGGGAGGC GCTCAAAGAA GAGGCCGCCA ACAGCACCAT CCAGCAAGTC
GGTTCGAAGG AGAACAACGA GTACCTGATC CGAACCGATG CCATGCCGTC CGAGCTGCAG
GCCCTGTCGC AGAAGTTCGA TCGCGATCTT GCCAAAGCTT TCGGTGAAGG CAAGGCCACC
GTGCTCCGCG TGGAGATGGT GGGTCCCAAA GTGGGCGAAG ATCTGCGGCA GAAAGCGCTC
AAGGCGATGT ACTACGCGCT GCTCTTCATC GCCATCTACA TTTCCGGCAG GTTCGAATTC
AAATGGGTTA CCAGTGCCGT GATGGGCGGC GTGTTGATGG TCGGGATCTA CTTCATGGAG
GCTCTCCAGA CGAACGTCAC CTACCTTGTT GTGGCGGCGC TGTGCGTCAC GCTCGTTCTG
TGCTGGATCC TCAAGTTGCC TTACGCGCTC GGGGCACTGG TGTCCCTCGT GCACGACATC
CTGATCACCA TAGGGATTTT CATCATTTTC GACAAGGAGT TCACCATCGA GGTGTTCGCC
GCCCTGTTGA CCCTTGCGGG CTACTCGCTC AACGACACGA TCATCGTCTA CGACCGTATC
CGGGAAAACC GCAACAAGGA CAGGAAACAG AAATTCGATG TGATGGTCAA CGATGCGATC
AATCAAACCC TGAGCCGCAC ACTGCTCACC TCGACCTGCG TGCTTTTCGT TCTGCTGTGC
CTCTTTTTCC TGGGCGGCGC GGTGATCCAT GATTTCACCT TCGCCATGTT GATCGGCATC
ATCACGGGAA CCTACTCGTC CGTCTTCGTG GCGAGCCCGA TTCTGATCAT CTACGAGGAT
TTGACCAAGA AAGGACTGAA GCCCAAGCGC GCCTGA
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| Protein sequence | MELIKPGINL NFVGMRYKAF LASVVVLLIG LAAFYLKGLN MGVDFAGGTL LQVKFSQPTN
PDAIREALKE EAANSTIQQV GSKENNEYLI RTDAMPSELQ ALSQKFDRDL AKAFGEGKAT
VLRVEMVGPK VGEDLRQKAL KAMYYALLFI AIYISGRFEF KWVTSAVMGG VLMVGIYFME
ALQTNVTYLV VAALCVTLVL CWILKLPYAL GALVSLVHDI LITIGIFIIF DKEFTIEVFA
ALLTLAGYSL NDTIIVYDRI RENRNKDRKQ KFDVMVNDAI NQTLSRTLLT STCVLFVLLC
LFFLGGAVIH DFTFAMLIGI ITGTYSSVFV ASPILIIYED LTKKGLKPKR A
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