| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0728 |
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| Symbol | |
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| ID | 4460794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 885254 |
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| End bp | 887296 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639701490 |
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| Product | exoribonuclease II |
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| Protein accession | YP_844861 |
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| Protein GI | 116748174 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGGC CGACCCAGCC CGAGATCGTT GCCGGCACGA TCCTGGAGTT TTTCGAATCC
AAGGAAGTCG TCTGCGCCGT CTGCACGGGG GTAAAGAACA ATCGTTTTTC CGCGCTGACG
GAACAGAACC GCGAAGTCAG CCTCGCGCCG AGCAGGATCA TCTTTGCGGG CAGCGCGCTG
TTGGACCTCA AGTCCGGGCG TGACGACCTG GTGGCGCGGC TGCGCGCCGC GGGGCAGGAG
CGGGAAAGAC TGACGGGGAG CGTCGACATC GCCGAACTGT GGTCGCTGTT CGAGGGCGAG
GAGGAAGGAT TCGAAGCCCG GGACCTGGCC GGGTTCGTTT TCAGCGGCGC GCTGAGCGAC
GACCACGTGG CCGCGGTCCA GAGGGTCCTT CTCCGGGACC GGCTCTATTT CCAGTACAAG
GACGGATGTT TTTACGCACG GGCGCGGGAA AAGGTGGAAC AGCGCCGGGA GGAACTGGCA
AGGGAGGCCG AAAGAGAGGC ACGGCTGGAC ACTTGGGCCG GGTGGCTCGA AGGGGCATGG
AACCGCAAAC CCAGGTCGCC CCTGGCGGAT CAGCAGGCGT TGATCGAGAC CCTGAAAGAC
TACGCGCTTT TCGGGCAGGA CTCCGCGGAA ATCGTCTTCA TCAAGGAACT GTTCAAACGG
GCCGGGATTG CCATTCAACC CCAGTCGGCT TTTCGTATCC TGGTGCGGCT GGGCGTCTGG
CAGGAAAACG AGAACCTTTA CCTCCACGAG CAGGGCATTT CCCAGGATTT TCCGCAAGAA
GTGGAGGAGC GGGTGGAAGT CATCCTGCAT TCGGCGCGCC CCGGAGCATC CGGCGAGACG
GAGCCGCAAC GCCGCGACCT GCGGCACCTG GATTGCCTCA CCGTCGACAG CGCCCTGACC
AGGGACTACG ACGATGCCTT GAGCTTCCGT GCATTGGACG GCAACCGATT CGAAGTCGGA
ATCCACATCG CCGATGCCGC GGAGTTCGTC CTGAAAGGGG ATGTGCTCGA CCGGGAAGCT
GAACGGCGGG CGACGTCCAT CTACCTGCCG GACGCCAGGA TCTCCATGCT GCCCGTCCCG
CTGTCCGAAG ATCTGTGCAG TCTCAAGGCC GGCGAAGACC GACCCGCCCT TAGTTTTCTG
TTCGTCGTCC ACGGCGACGG AACCATCGCC GGGTCCGAAA TTGTCTCGAG CACGATCCGC
GTGGCGGAGC AACTCACCTA CGAAGAGGTG AACGAGCGCA TACGGCTCGA CGATTCGCCT
GCCGCGCTGT CCGCCCTGGC GATGAAGCTC AGGAACGCGC GGCTCGACCG CGGAGCATCG
ATCCTTCCCC TTCCCGAAAT CCAGGTCTAC GTGAACTCGG CGGGAATGAT CCAGGTTTCC
CGGTACGAAA AGGAAACGCC GAGCCAGATC ATGGTGTCGG AATGGATGAT TGCCGCCAAC
GCTGCCGCAG CGGCCTTTCT CGCCGAACGC GACCTGCCGT CGGTGTTTCG CGGCCAGGGG
GAATGCAAGC AGGAAACCGA TTTCACCCAG AGCGAACACG AACTGTTTCG CATCTACCGG
CAACGGCGTC TCTACGCCCG GGCCGAGCTG GACACCCGCT CCAAACAGCA CTGCAGCCTG
GCCCTGGAGC ACTACACCAC TGTAACCTCC CCCATCAGGC GGTATACGGA CCTGGTGGTG
CAGCGCCAGA TCAAGCAGGC GCTCCAGGGC GGCCCTCCCC TCTACGACGA GGACGAGTTG
CGCGGTCTCA TCACCAGGCT GACCGCGCTC CAGTCCAGGA TCGCGTTCAT TCAACGCAAG
TGGACCCGGT ACTGGATCCT CAAGTATCTC GAGCAGGAGG ACATCCACTC ACTGAACGCC
CTTATCCTCG AGCAGAACGA ACGCTATTCG CACCTGCTCC TCCCCGATTT CCTCATCGAG
ACCAACGCAC ACCTGCCCGA AAACGTGAAA TTCCAGCCCG GGGAAATGGT GAGGGTAAAG
ATCGACCGGT TGAATCCCCG GGAGGACATC CTGCGCGTCC AGCTCCCCGA TTTCGGAAAG
TAG
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| Protein sequence | MSRPTQPEIV AGTILEFFES KEVVCAVCTG VKNNRFSALT EQNREVSLAP SRIIFAGSAL
LDLKSGRDDL VARLRAAGQE RERLTGSVDI AELWSLFEGE EEGFEARDLA GFVFSGALSD
DHVAAVQRVL LRDRLYFQYK DGCFYARARE KVEQRREELA REAEREARLD TWAGWLEGAW
NRKPRSPLAD QQALIETLKD YALFGQDSAE IVFIKELFKR AGIAIQPQSA FRILVRLGVW
QENENLYLHE QGISQDFPQE VEERVEVILH SARPGASGET EPQRRDLRHL DCLTVDSALT
RDYDDALSFR ALDGNRFEVG IHIADAAEFV LKGDVLDREA ERRATSIYLP DARISMLPVP
LSEDLCSLKA GEDRPALSFL FVVHGDGTIA GSEIVSSTIR VAEQLTYEEV NERIRLDDSP
AALSALAMKL RNARLDRGAS ILPLPEIQVY VNSAGMIQVS RYEKETPSQI MVSEWMIAAN
AAAAAFLAER DLPSVFRGQG ECKQETDFTQ SEHELFRIYR QRRLYARAEL DTRSKQHCSL
ALEHYTTVTS PIRRYTDLVV QRQIKQALQG GPPLYDEDEL RGLITRLTAL QSRIAFIQRK
WTRYWILKYL EQEDIHSLNA LILEQNERYS HLLLPDFLIE TNAHLPENVK FQPGEMVRVK
IDRLNPREDI LRVQLPDFGK
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