| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0674 |
|---|
| Symbol | |
|---|
| ID | 4460208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 816475 |
|---|
| End bp | 818622 |
|---|
| Gene Length | 2148 bp |
|---|
| Protein Length | 715 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639701430 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_844808 |
|---|
| Protein GI | 116748121 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.076052 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGGCAGC GTACCCCGGC ACCCGACTCG GTACCCTCAG AGGAGACGAC CGTGGCGAGC
CCCAAAATTA CCGGCACTGA CCGGCACCTA CACTTACGGC CCCGTCGCAG TTGCGATAAC
GGCGATCTGC CGCTCGCGTA TGCTGCCACT ATCGCCGCTT CCGGCGCCGA GATCGTGAAG
GAACTGGCCG GGAGTGAGAG CAAGACGACA GCCGTCTCCG TCGCCCTCGT CGATCACGAG
CGCCTCCTCT GGGCGGAGGC GTTCGGCTCC ATCGACCGGG CCCACGGTGC AGCGCCTACC
ACGGAAACCC TCTTCTGCAT CGCTTCCTGC AGCAAGGTGA TCGCCGCGGT TGCCGCGATG
ATCCTGGTCG ATCGAGGGAT GGTGGAACTC GATGCCCCGC TGGTCCGCTA CGTGACCGAT
TTCCGCATGG CCGACGACGA ACCGTGGCGT GACATCACCG TGCGCATGCT GCTCAACCAC
TCGTCCGGAC TCCCCGGCAT CCATTTCCCA AACGTTCTCA CCGTTGTGCC GTTCCATGGT
TACGCCGCCC AGGTTCGGGA CATGCTGGCC ACCGAACGCC TCAAGCACGC GCCGGGCGAG
ATGGCGGTGT ACGGCAACGA CGGCTTTATG CTGGTCGAAT GCCTGGTCAC CGCAGTCACC
GGTCAGCCAT ACACCGAGTT CGTCGAGCAG GAAATCCTGA AACCGCTGGG GATGAATCAC
AGTCGCTTCG CCCTGGAACC CTTTGCCCCC GGCAGCTTTG CCCCCGGGCT GGATGAAGCG
GGGCGGCCCG AGCCGCAGGA ATACACCAAC ATCTATTCCA GCGGCCTCTT CTCGACGCCG
AGCGATCTGG GAAACCTGGC GATGATGTTC CTCAATGGCG GCCGGCGGGG GGGCCGGCGC
ATTCTCTCCG CAGCAGCCGT GGCCGAGATG GGTCGGGACC AGACCGTGAA CCTGGCGTTC
AACCCGGTCA CGGATCATCA CGTCCACTTT GGCCTCGGCT GGGACGGCAT ACTTCAGGGG
GGGCTGGCGG CCGCGGGGGT GACGGGGTGG CACAAGGCGG GCGACGCCGA TCATTATCAC
AGCTATTTCA TCGTCGCCCC CGACGAGCGC CTCGCGGTCG TGGTCATGGT CACCAACAGC
ATGGGGATAG GGAGCATCGC CACTCCCCTG GCCGAGCGGG TTCTGCTCCA CGCGCTGGCC
GAGCGGGGGC GCATCGCCCG GTTGCCGGTG CCGCCGGAAC CCGCCACTCT CCCGGCCATC
CCGGCCGGTG ACGGGGAACC GGCTGCCTTC ACCGGCATCT ACGCCGGCAG CTACGGCCTG
TATCGGCTGG ATGTCGGTGC CGATCGCACC CTGACCCTCT CGAGCTTCGT CAACGATCGT
TGGCACCCCG CTCCTGAAGG ACTCAGGCTT CGTCAGGATG GTCGCTTCGT GGCCGACAGC
TGTCCCGAGA GGGCATACCG CGGATTTGTG GCAGCCGGCC GCCGTTATCT GGCCGTGCGT
GCCCCGTTCG GGATGGGGCA CTACGATATG GAACTCCCCG TCGGCCATGA ACTCCTCCCC
GGCCAGCCCC TGTCGGCCCG GTGGCAGGCG CGCGTCGGCA GGCGGTGGCT GACGGCCAAT
GAACCTTGCA GCGCCTTTCT GGCTCTGGGG CGGCAGCCTC CCCTGATTTG CCTGGGAGAG
GTCCAGGGTC TTGAAGGGTA CCTCGCCGTA TCGCTCCGTT CAGCGGGACT TGACCTGGCA
CAGGTCGTCG ATCCGAGGGA TAGTGATCAT GTCGCCCGTA TGTGTCTCAA GATTCCCATC
GACAACGGGT GGGGGCTCAG TGATCTGGTG ATCGAGGCGA GGGAGGGAGA GGAATGGATT
CTCTGGTGCG GCACCCGGTA CCGCCCGCTG GAGACCGTCC CCGCTCCGGA GTCGGGGCGC
GGCACGGTGA CGATCGGCCC CGAAGGGCTG GGCGAGTGGT TCCGGTGCCC GGCGGCTTCA
GCTCTGACCC TGGCCGGCGC GTGCTCGTGG TATCTATATA ATGCGGAATT CGATCTCAAG
GACTGGGGCA TGGGGGAGAA GACCATTGTC GGTTCGGTCG ACGATGGTTC CTACCTGCTC
CTGTACGGCG CGCCGGGAAC GACCGTCACG CTGACGCTGC AACCTTGA
|
|---|
| Protein sequence | MRQRTPAPDS VPSEETTVAS PKITGTDRHL HLRPRRSCDN GDLPLAYAAT IAASGAEIVK
ELAGSESKTT AVSVALVDHE RLLWAEAFGS IDRAHGAAPT TETLFCIASC SKVIAAVAAM
ILVDRGMVEL DAPLVRYVTD FRMADDEPWR DITVRMLLNH SSGLPGIHFP NVLTVVPFHG
YAAQVRDMLA TERLKHAPGE MAVYGNDGFM LVECLVTAVT GQPYTEFVEQ EILKPLGMNH
SRFALEPFAP GSFAPGLDEA GRPEPQEYTN IYSSGLFSTP SDLGNLAMMF LNGGRRGGRR
ILSAAAVAEM GRDQTVNLAF NPVTDHHVHF GLGWDGILQG GLAAAGVTGW HKAGDADHYH
SYFIVAPDER LAVVVMVTNS MGIGSIATPL AERVLLHALA ERGRIARLPV PPEPATLPAI
PAGDGEPAAF TGIYAGSYGL YRLDVGADRT LTLSSFVNDR WHPAPEGLRL RQDGRFVADS
CPERAYRGFV AAGRRYLAVR APFGMGHYDM ELPVGHELLP GQPLSARWQA RVGRRWLTAN
EPCSAFLALG RQPPLICLGE VQGLEGYLAV SLRSAGLDLA QVVDPRDSDH VARMCLKIPI
DNGWGLSDLV IEAREGEEWI LWCGTRYRPL ETVPAPESGR GTVTIGPEGL GEWFRCPAAS
ALTLAGACSW YLYNAEFDLK DWGMGEKTIV GSVDDGSYLL LYGAPGTTVT LTLQP
|
|---|
| |