| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mthe_0398 |
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| Symbol | truD |
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| ID | 4462592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosaeta thermophila PT |
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| Kingdom | Archaea |
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| Replicon accession | NC_008553 |
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| Strand | + |
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| Start bp | 402471 |
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| End bp | 403772 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639699402 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_842831 |
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| Protein GI | 116753713 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGGGC TTATTCCAGC GGCTGAGCGC GACAAAGCTT TGGGCATGGA GATCTACATC
ACCAGAACTC CTGGCATCGG TGGGGTTATA CGCAAGAGCC CCGAGGATTT CGTCGTCGAG
GAGATATTTG ATGAGGATCA TTACGAGGGT GGGAGGTATC TCGTCGTCGA GGTCGAGAAG
CGTGACTGGG ACACGCACAA ACTGGTAAGA GAGATCGCGA GGGCCCTCAG AATAAGCCAG
AGGCGAATAA GCTTCGCAGG CACCAAGGAC AGGAGGGCGG TCACAAGGCA GAGAATGGCG
ATCATGAACC TCGATGAGGA TGAGCTGATA GATCTGAGAA TCCCTGATCT CAAGATCTCT
GTTCTCGGAA GAACAAACAG GCCTCTCGGT CTTGGAGATC TGAAAGGCAA CCGCTTCAGG
ATTGTGATAA GAGATCTCGC AGTCGATGTA GATTCCGCCA GGGAGCGTAT GGAGCGCATA
ACCTCTGAGA TACTGGAGAT CGGGGGAGTC CCGAACTACT TCGGCGTCCA GAGGTTCGGC
GAGATCCGGC CTGTGACGCA TCTTGTTGGC GAGGCGATCG TGAGAGGAGA TCTGGAGCGT
GCGGTATTCA CCTATCTCTC CATGCCATTT GATGGTGAGC CTGAGGAGAC GAGGGCTGCG
CGTGAGGAGC TCTGGGAATC GGGGGATGTG AGAGCAGCGC TCAGGAGATA CCCGAGGCAT
CTCACATACG AGCTGGCTAT GCTGAACCAT CTGGTCTCCA GTCCAGGAGA TCATGCAGGC
GCTTTGATGG TTCTCCCTGA TAACCTGAGG AGGATGTTCG TTCATGCCTA CCAGTCATAT
CTCTTCAACA GAATGCTCAG CATGCGTCTC CGGAGATGCC TCACATTCGA GCCGGTGGAA
GGGGATATCG TCTGCTTCTC CAAAGATGGA ATGCCGGATG TGAGCAGGAT TGAGAGAGTG
ACAGCAGAGA ACATCGAGGC CGTAAAGAGG TTGTTTGATC GAAAACGCGC ATTCGTCACC
CTCCCGCTGA TCGGATATGA GTCTGAGCTT GCTGATGGCG AGCAGGGCGA GATCGAACGT
AGCATCTTGG AATCAGAGGG GATTTCCAGG GAGAGCTTCT CTGTGAAGAC CTGTCCGGAT
CTGAGCTCAC CCGGCGCGAG AAGGCCAGCT CTTCTGCAGG TTGATCCGGT CTTCGAACTT
GGTGCTGAAA GCGCATGCAT TCGGTTCTCC CTTCCTCCTG GATCGTATGC AACGGTGGTG
CTGAGGGAGT ACATGAAGGA TACCAGGGAT GTATCCGAAT GA
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| Protein sequence | MEGLIPAAER DKALGMEIYI TRTPGIGGVI RKSPEDFVVE EIFDEDHYEG GRYLVVEVEK
RDWDTHKLVR EIARALRISQ RRISFAGTKD RRAVTRQRMA IMNLDEDELI DLRIPDLKIS
VLGRTNRPLG LGDLKGNRFR IVIRDLAVDV DSARERMERI TSEILEIGGV PNYFGVQRFG
EIRPVTHLVG EAIVRGDLER AVFTYLSMPF DGEPEETRAA REELWESGDV RAALRRYPRH
LTYELAMLNH LVSSPGDHAG ALMVLPDNLR RMFVHAYQSY LFNRMLSMRL RRCLTFEPVE
GDIVCFSKDG MPDVSRIERV TAENIEAVKR LFDRKRAFVT LPLIGYESEL ADGEQGEIER
SILESEGISR ESFSVKTCPD LSSPGARRPA LLQVDPVFEL GAESACIRFS LPPGSYATVV
LREYMKDTRD VSE
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