Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mthe_0028 |
Symbol | |
ID | 4463406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosaeta thermophila PT |
Kingdom | Archaea |
Replicon accession | NC_008553 |
Strand | + |
Start bp | 25309 |
End bp | 27123 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639699036 |
Product | DNA-directed RNA polymerase subunit B' |
Protein accession | YP_842471 |
Protein GI | 116753353 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR03670] DNA-directed RNA polymerase subunit B |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.274287 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCTGATG CCAGGGTTTT CATAAATGGA GAGATAGTCG GGCATCATCC GGAGCCCGAG AAGCTCGTGG CCGAGATCAG GCGTTTGAGA AGAGCCGGCG TGATAAGCAA TCAGATCAAT GTCGCATACT ACGACAGAAC AAACGAGATT GTGATAAACA CAGACTCTGG AAGGGCGAGA AGGCCTCTTA TCATCGTGGA GAACGGACAG CCCCTTGTCA CAGAGGAGGA TATTCGGAGA CTGGAGCGGG GAGAGGCGAC CTTTGATGAT CTTGTTCGAG AGGGAAAGAT TGAGTATCTC GATGCCGAGG AGGAGGAGAA TGCCTACATA GCGATCTGGG AGAATGATCT CACAGAGGAG CATACGCATC TCGAGGTCGA TCCGTCTCTA ATCCTGGGGA TATGCACAGC ACTGGTCCCG TACCCGGAGC ACAACGCGAG CCCGAGGAAT ACCATGGGCG CCGGCATGAT CAAGCAGTGT CTTGGCTTCC CGATGGCGAA CATCCGCCTG AGACCTGACA CACGGGGCCA CTATCTCCAT TACCCACAGC AGCCCATTGT CAGTACAAGA ACCGCCAAGG CAATCGGTTT CGATAAAAGG CCAGCGGGCC AGAACTTCGT CGTGGCGGTT CTCGCATACG AGGGGTACAA CATCGAGGAC GCCCTGGTGA TGAACAAGAG CGCCGTCGAG CGCGGGCTTG CCAGATCTCA TTTCTTCAGA GTATCAGAGG CAGAGGAGAG GAAATACCCT GGGGGTCAGG AGGACAAGTT TGAAATTCCC GATCTCGAGG TCAGGGGCGC GAGGGGCTCT GAGACCTACG GCCAGCTCGA TGCCGACGGT CTTGTAAATC CGAACGCTGA TGTCGGTCCC AACGATGTGC TTATAGGCAA GACGAGCCCG CCGAGGTTCC TTGAGGAGCC GACAGAGTTC GGAATCAGCC CGCAGCAGAG GCGCGAGACT TCTGTCACGA TGAGGTCCAA CGAGAAGGGC GTCGTCGATC TGGTCATCCT CACAGAATCG CAGAACGGCA ACCGGCTCGC CAAGGTAAAA ACCCGTGACC AGAGGATCCC CGAGCTAGGA GACAAGTTCG CATCACGCCA CGGTCAGAAG GGTGTTGTGG GTCTTCTTCT CCCCCAGGAG GATATGCCGT TCAGCGAGAG CGGCATGGTC CCGGATCTTC TTCTCAACCC GCACGCAATC CCATCGAGAA TGACAGTCGG GCACGTCCTC GAGATGATCG GCGGGAAGGT GGGTTCGCTT GAGGGAAGGT TCATAGATGC GACCGCGTTT CTCGGAGAGA AGGAGTGGGA TCTCAGGAGC GCTCTGACAA GGCTAGGATT CGCCCATACA GGAAAAGAGG TTCTGTACGA TGGAGCGACC GGCGAGAGGA TACAGGCCGA CATATTTGTC GGGGTGATCC TGTACCAGAA GCTGTACCAC ATGGTCACCG GAAAGATGCA TGCGAGATCA CGCGGCCCTG TGCAGGTGCT CACCAGGCAG CCGACAGAGG GCAGGGCTAG AGAGGGCGGA CTGAGGTTCG GAGAGATGGA ACGCGATGTG CTCATAGCCC ATGGCGCTGC TCTTGCGCTG AAGGAGAGGC TCGTCGAGGA GTCAGATAAA GTAACGGAAC TCGTGTGCAG CAAATGCGGA GTCATAGCGA TTCACGATCG GAGAAGAAAT ATGGACCTCT GCCCAGTCTG CGGCACGGAC ACCGACATAT ACCCCGTGGA GATGAGCTAT GCGTTCAAGC TTCTGCTTGA CGAGATAAAA TCGCTGGGCG TGGCACCGCG CCTCATGCTG GAGGATGCAG TTTAG
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Protein sequence | MADARVFING EIVGHHPEPE KLVAEIRRLR RAGVISNQIN VAYYDRTNEI VINTDSGRAR RPLIIVENGQ PLVTEEDIRR LERGEATFDD LVREGKIEYL DAEEEENAYI AIWENDLTEE HTHLEVDPSL ILGICTALVP YPEHNASPRN TMGAGMIKQC LGFPMANIRL RPDTRGHYLH YPQQPIVSTR TAKAIGFDKR PAGQNFVVAV LAYEGYNIED ALVMNKSAVE RGLARSHFFR VSEAEERKYP GGQEDKFEIP DLEVRGARGS ETYGQLDADG LVNPNADVGP NDVLIGKTSP PRFLEEPTEF GISPQQRRET SVTMRSNEKG VVDLVILTES QNGNRLAKVK TRDQRIPELG DKFASRHGQK GVVGLLLPQE DMPFSESGMV PDLLLNPHAI PSRMTVGHVL EMIGGKVGSL EGRFIDATAF LGEKEWDLRS ALTRLGFAHT GKEVLYDGAT GERIQADIFV GVILYQKLYH MVTGKMHARS RGPVQVLTRQ PTEGRAREGG LRFGEMERDV LIAHGAALAL KERLVEESDK VTELVCSKCG VIAIHDRRRN MDLCPVCGTD TDIYPVEMSY AFKLLLDEIK SLGVAPRLML EDAV
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