Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_5156 |
Symbol | |
ID | 4452759 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008543 |
Strand | + |
Start bp | 2204670 |
End bp | 2205971 |
Gene Length | 1302 bp |
Protein Length | 433 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639697212 |
Product | type III effector Hrp-dependent outers |
Protein accession | YP_838782 |
Protein GI | 116693249 |
COG category | [S] Function unknown |
COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.426256 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGCTT CCGCTTCCCG TCCCCTGCTC GGCTGCATCG CCGACGATTT CACCGGCGCG ACCGACCTCG CGAACATGCT CGTCAAGAGC GGCATGCGCA CCGTGCAGAC GATCGGCGTG CCCGCCGACG GCGCCGCTGC CGACACGATC GTCGACGCCG ACGCGATCGT CGTCGCGCTG AAGTCGCGCA CGATCCCCGC CGCCGACGCC GTCGCGCAAT CGCTCGCCGC GTACGCATGG TTGCGCGCGC AAGGGTGCCG CCAGTTCTTC TTCAAGTACT GCTCGACGTT CGACTCGACC GACGCGGGCA ACATCGGGCC GGTGGCCGAC GCGCTGCTCG ATGCGGCCGG CGGCGACTTC ACGATCGCGT GCCCGGCGTT TCCCGAGAAC GGCCGCACGA TCTACCGCGG CCACCTGTTC GTCGGCGACG TGCTGCTGAA CGAATCGGGG ATGGAAAATC ATCCGCTCAC GCCGATGAAG GACGCGAACC TCATGCGCGT GCTGCAACGG CAGACGAAGT CGCCGGTCGG CCTGATCCGC TACGACACGA TCGCGCTCGG CGCGGCGGCC GTGCGCGCGC GGATCGACCA GCTGCGCGCG GAAGGCGCCC GTTTCGCAAT CGCCGACGCG CTGTCGGACC GCGATCTGTA CGTGCTCGGC GAAGCGTGCG CGGGCCTGCC GCTCGTCACC GGCGGCTCGG GCATCGCGCT CGGCCTGCCG GCGAATTTCC GCCGCGCGGA GCAGTTGCCC GAGCGCGACA ACGCGGCGTC GCTGCCGCGC ATCGACGGCC TGTCGGCCGT GCTCGCCGGC AGCGCGTCGA AAGCCACCAA CGCGCAGGTC GCCGCATGGC GCGCGACGCG TCCGAGTTTC CGTATCGATC CGCTCGCGGC CTCGCGCGGC GAGCCCGTCG TCGATCAGGC GCTCGCGTTT GCGCGCTCGC ACCTGCCCCA GCCCGTCCTG ATCTATGCGA CCGCCACGCC CGACGAAGTG AAGGCCGTGC AGCAGGCGCT CGGCGTCGAC GCGGCCGGCC ATCTCGTCGA AAGCACGCTC GCGGCGATCG CCCGCGGGCT GCGCGAACTC GGCGTGCGCA AGTTCGTCGT CGCCGGCGGC GAGACGTCCG GCGCAGTCGT GCAGGCGCTC GACGTGAAGT CGCTGCAGAT CGGCGCGCAG ATCGATCCGG GCGTGCCGGC CACGGCCACC ATCGACGCGC AGCCGCTCGG CCTCGCGCTG AAATCCGGCA ACTTCGGCAC CACGGACTTT TTCGACAAGG CGCTGCGCGC GCTGGACGGA GCCGCACGAT GA
|
Protein sequence | MTASASRPLL GCIADDFTGA TDLANMLVKS GMRTVQTIGV PADGAAADTI VDADAIVVAL KSRTIPAADA VAQSLAAYAW LRAQGCRQFF FKYCSTFDST DAGNIGPVAD ALLDAAGGDF TIACPAFPEN GRTIYRGHLF VGDVLLNESG MENHPLTPMK DANLMRVLQR QTKSPVGLIR YDTIALGAAA VRARIDQLRA EGARFAIADA LSDRDLYVLG EACAGLPLVT GGSGIALGLP ANFRRAEQLP ERDNAASLPR IDGLSAVLAG SASKATNAQV AAWRATRPSF RIDPLAASRG EPVVDQALAF ARSHLPQPVL IYATATPDEV KAVQQALGVD AAGHLVESTL AAIARGLREL GVRKFVVAGG ETSGAVVQAL DVKSLQIGAQ IDPGVPATAT IDAQPLGLAL KSGNFGTTDF FDKALRALDG AAR
|
| |