| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_4854 |
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| Symbol | |
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| ID | 4451727 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008543 |
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| Strand | - |
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| Start bp | 1854216 |
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| End bp | 1856261 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639696910 |
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| Product | YscC/HrcC family type III secretion outer membrane protein |
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| Protein accession | YP_838481 |
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| Protein GI | 116692948 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0807881 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCGAC GCGTCGCCTC GATCCGGTTT CAACCGCGCA GCCTGCAACG GGCCGCGCTT
GCCGTGTGCG CGACCGCGCT GCTCACGGCG TCGCTGTGCA TGGCGCCCGC GCAGCATGCG
CGCGCCGCGG ACCTGCGCTG GCGCAACAAG CCGTTCACGA TCGTCGCGAA CGGCAAGAAG
ATCGGCGACT TCATCCGCGA GCTCGCGTCG TCGCAGGGCG TGACGGCGGT GGTCGACCCG
AAGGTCGACG GCGTGATCAG CGGCCGCTTC TCCGGCACGC CGCAGCAGAC GCTCGACACG
ATCTGCTCGA CCTACGGGCT CACGTGGTAC TACGACGGCT CGTTCCTGTA CGTCGATCCG
GCCGACCAGT CGCAGACGCA GATGATCCCG ATCCCGCCGA ATGCGTCCGG CGAAATCGGC
CGCGCGCTGC AGGCGATGCA GATTCCGGAC AAGCGCTACA CGCTGGTGAT CAACGACCGC
GCCAATAGCG TGTACGTGGC CGGCCCGCGC CGCTATGTCG AGCTCGTGCG GCAGGCGGTC
GGCTCGGTCG GCGATCCGGC GGCGAACGGC GCGCATGCGG ACATCCGCGC GTTCCGGCTG
AAATACGGCT GGGCGTCGGA CTTCACGATC AACCGCTCGG GCAAGGAAGT GACGGTGCCG
GGCGTCGCGA CGATCCTGCG CCGGCTGTTC GGCAAGGGCG GCGGCACGAC CGCGGCGCCA
TCGAGCACGC CGCTCGGGCA GGCCGCGCGC CAGGTGAAGC TCGGCTCGGG GCTGACGATC
GCGGTGCCGC GGCTCGACTT TCCCGACATC TCGGGCGGCC CGCGGCAGGG CGGCTATGGC
GGGGCGGACA GCGGCATGGG CGGCGGCTTC TCGCCGTTCG CGAACAACGG CGGCGGCGAC
ACGCTGCCGC AGATCGTCGC CGATCCGGCG ATCAACGCGG TGATCGTGCG CGACCTGCCG
GAGAACATGT ACCGCTACCA GTCGCTGATC AACCAGCTCG ACGAGCGGCC GCGCATCGTC
GAGATCAACG TGACGATCAT CGACATCAAC GAGGATTCGC TCGACAGTCT CGGGATCGAC
TGGCGCCTGC ACACGACGCA CGGCGACGTG CAGATCGGCA ACGGCCAGAA CGCGCTGAAC
GGCAACACGC AGTACAACGG CGTCGGCAAC CCGCCGCTGA CGTTCGGCAT CGGCACGTCG
GAAACCGGGC AGACGGGCAC CTTCATGCCG ACCGGCATCG CGCTGACCGC ATCGATCGGC
GGGTCGCTGC GCAACTACCT GCTCACGCGC GTGAACGCGC TCGCGCAGAA AGGCCAGGCG
CAACTGCGAT CGAAGCCGAA GGTGCTCGCG CTCGACAACA CCGAGGCGAT CCTCGAGAAC
CTCACGCAGT TCTACGTGCA GGTGCCCGGC TATCAGGATT CGTCGCTGTA CAGCGTGACG
ACCGGCACCA GCATCAAGGT GACGCCGATG ATCGTCGACG AGGCGATCCG CAATGCGGCG
GCGGTGTCGG GCAACCCGCA GAGCGTGATG ATGTCGATCG ACATCCAGGA CGGCAACATC
GTGCCGGGGC AGGCCGTGTC GAACGTGCCG GTGATCCAGC AGCGCAACAT CGTCACCAAG
ACGATGATCG ACGAAGGCAA GAGCCTCCTG ATCGCCGGTT TCAACGATGA TGAGGTGAAG
CTGAACAAGA GCGGCGTGCC CTGGCTGTCC GACATTCCGC TGATCGGCAA CCTGTTCAAG
TACACCGACA AGTCGGGCAA CCACATGGAG CGGTTCTACC TGCTGACGCC GCGGGTCGTG
ACGAACGCGT CGATGTACGC GCCGGACGGC TCGCCCGTGA ACCCGGGCGT CGACGGGCCG
GCGAGCCAGG AAGGGATGTC GATGTATCGG CCGCCCGACA ACGACGTCGC GGTGCCGCTG
ACGCCGAAGC CGCTGCCTGG CACGAAGTTC GGCCCGCCCG CGTTGCCGGC GCCACCCAAG
GATGCGGCGT CGCAGCCGGT GGCGACGACC GCAGGAGCAC CCACCCATGT CGACGAGCAT
CATTGA
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| Protein sequence | MRRRVASIRF QPRSLQRAAL AVCATALLTA SLCMAPAQHA RAADLRWRNK PFTIVANGKK
IGDFIRELAS SQGVTAVVDP KVDGVISGRF SGTPQQTLDT ICSTYGLTWY YDGSFLYVDP
ADQSQTQMIP IPPNASGEIG RALQAMQIPD KRYTLVINDR ANSVYVAGPR RYVELVRQAV
GSVGDPAANG AHADIRAFRL KYGWASDFTI NRSGKEVTVP GVATILRRLF GKGGGTTAAP
SSTPLGQAAR QVKLGSGLTI AVPRLDFPDI SGGPRQGGYG GADSGMGGGF SPFANNGGGD
TLPQIVADPA INAVIVRDLP ENMYRYQSLI NQLDERPRIV EINVTIIDIN EDSLDSLGID
WRLHTTHGDV QIGNGQNALN GNTQYNGVGN PPLTFGIGTS ETGQTGTFMP TGIALTASIG
GSLRNYLLTR VNALAQKGQA QLRSKPKVLA LDNTEAILEN LTQFYVQVPG YQDSSLYSVT
TGTSIKVTPM IVDEAIRNAA AVSGNPQSVM MSIDIQDGNI VPGQAVSNVP VIQQRNIVTK
TMIDEGKSLL IAGFNDDEVK LNKSGVPWLS DIPLIGNLFK YTDKSGNHME RFYLLTPRVV
TNASMYAPDG SPVNPGVDGP ASQEGMSMYR PPDNDVAVPL TPKPLPGTKF GPPALPAPPK
DAASQPVATT AGAPTHVDEH H
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