| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_2062 |
|---|
| Symbol | |
|---|
| ID | 4448574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | - |
|---|
| Start bp | 2289343 |
|---|
| End bp | 2291217 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639694116 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_835706 |
|---|
| Protein GI | 116690083 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.389023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAGG GTTCGCCCCG GGCCGCCGCC GCGCGTGCCT GCCTTGGCGC GCTGCGGGCC
GCCGGCCGCG TGGCCGCGGT GCTGGCGCTG CATGCGGTGC TGGCCGCGCC GGCCGCGCAG
GCGGCCTACG CCATCGCGCA GTACGGCGAG CCGAAGTATC CGCCGGGCTT CAAGCATTTC
GACTACGTGA ACCCCGACGC GCCGAAGGGC GGCACGCTCG TGCTCGCGAA TCCGAGCCGA
CTGACGTCGT TCGACAAGTT CAATCCGTTC ACGATGCGCG GCAACACCGC GCCCGGCATC
GACATGCTGT TCGAGAGCCT CGCGACCGGC AGCTCCGACG AACCGGCTTC CGCCTACGGG
CTGCTGGCCG ACGACATCGA CGTCGCCCCG GACCGCCGTT CGGTCACGTT CCACCTGAAT
CCGCGCGCAC GCTTTTCGAA CGGCGATCGC GTCACGGCCG ACGACGTCAA GTTTTCGTTC
GATACGCTCA AGAGCAAGCA GGCCGCACCG CAGTTCGGCG CATATTTCGC GGAAATCGCG
AAGGCCGTGG TCGTCGATCC GGCGACCGTG CGCTTCGAGT TCCGTAGCGC GAACCGCGAA
CTGCCGCTGA TCGCCGGCGG CGTGCCCGTG TTTTCGCGCA AGTGGGGATT GCGCGCGGAC
GGCTCGCGCA TCCCGTTCGA CCAGCTTGCG TTCGAGCAGC CGATCGGCAG CGGCCCGTAC
GTGATCGAGC GCTACGACAA CGGCCGCACG ATCACCTACC GGCGCAACCC CGCGTACTGG
GGCGCCGACC TGCCGGTACG AGTCGGCACC AACAACTTCG AGCGGATCGT GTACAAGCTG
TACGGCGACG GCGTCGCGCG GCTCGAGGCG TTCAAGGCCG GCGAGTACGA CGTGCTCGTC
GAGTACATCG CACGCAACTG GACGCGGCGC GACGTCGGCA AGCGTTTCGA CAGCGGCGAG
CTCGTCAAGC GCGAATTCCG CCAGCATAAC GGCGCCGGCA TGCAAGGCTT TTTCGTGAAC
CTGCGCCGGC CGCTGTTCCG CGACGTGCGC GTGCGCCAGG CGCTCGACCT GGCGTTCGAC
TTCGAGTGGC TGAACCGGCA ACTGTTCTAC AGCGCATACA CGCGTCTCAA CAGTTATTTC
GCCGACACCG ACCTGCAAGC GACTGGTACG CCGAGCGAAG GCGAGCTGAA GCTGCTGGAG
CCGCTGCGCG CACAGCTCGA TCCGGCCGTG TTCGGCCCGA CGGTCACGCA GCCGGACACG
AATCCGCCGG GCTCGCTGCG CGCGAACCTG CTGAAGGCGC GCGCCCTGCT CGCGCAGGCC
GGCTGGACCT ATCGCGACGG CGCGCTGCGC AACGCGAAGG GCGAGCCGTT CGCGTTCGAG
ATCCTCGACG ATGCGGGCGG CGCGATGGAG GGCGTCGTGA CCGCCTACCA GCGCAACCTG
GCGAAGCTCG GCATCGTCGT GCGGTTTCGC ACGGCCGATT ACGCGCTGCT GCAAAAGCGC
CTCGATGCAT TCGACTACGA CATGACGACG ATCCGCCTGC CGGGCGTGCA GGTGCCGGGC
GCCGAGCAAT ACTCGCGCTA CGCGAGCAAG TTCGCCGACG AGCCGGGCTC CGACAACTTC
ATCGGATTGA AATCGCCGGC CGTCGACGCG TTGCTGCATG CGCTCGGCGC CGCGCAAACG
CGCGAGGAAC TGCTCGACGC GACGCACGCG CTCGACCGCG TGCTGATGCA CGGCTACTAC
GCGGTCCCGC AGTGGTACAG CACGACGCAC CGCATTGCGT ACAAGCGCAC GCTCGCCTAT
CCGCAGACGC TGCCGCTGTA CTATTCGGCC GAGGGCTGGG TCGTGTCGAC CTGGTGGGCG
AAGCCCGATC ACTGA
|
|---|
| Protein sequence | MTKGSPRAAA ARACLGALRA AGRVAAVLAL HAVLAAPAAQ AAYAIAQYGE PKYPPGFKHF
DYVNPDAPKG GTLVLANPSR LTSFDKFNPF TMRGNTAPGI DMLFESLATG SSDEPASAYG
LLADDIDVAP DRRSVTFHLN PRARFSNGDR VTADDVKFSF DTLKSKQAAP QFGAYFAEIA
KAVVVDPATV RFEFRSANRE LPLIAGGVPV FSRKWGLRAD GSRIPFDQLA FEQPIGSGPY
VIERYDNGRT ITYRRNPAYW GADLPVRVGT NNFERIVYKL YGDGVARLEA FKAGEYDVLV
EYIARNWTRR DVGKRFDSGE LVKREFRQHN GAGMQGFFVN LRRPLFRDVR VRQALDLAFD
FEWLNRQLFY SAYTRLNSYF ADTDLQATGT PSEGELKLLE PLRAQLDPAV FGPTVTQPDT
NPPGSLRANL LKARALLAQA GWTYRDGALR NAKGEPFAFE ILDDAGGAME GVVTAYQRNL
AKLGIVVRFR TADYALLQKR LDAFDYDMTT IRLPGVQVPG AEQYSRYASK FADEPGSDNF
IGLKSPAVDA LLHALGAAQT REELLDATHA LDRVLMHGYY AVPQWYSTTH RIAYKRTLAY
PQTLPLYYSA EGWVVSTWWA KPDH
|
|---|
| |