| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1525 |
|---|
| Symbol | |
|---|
| ID | 4439281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 1517381 |
|---|
| End bp | 1518967 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 639673352 |
|---|
| Product | ABC-type multidrug transport system, ATPase and permease component |
|---|
| Protein accession | YP_815317 |
|---|
| Protein GI | 116630145 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000153215 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.145022 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAG GAGTAACAAT GAAAAAGTTT ATCAACAAAA AATTTTTTGC CTTAAGCATC
TTGCTTTCAT GCTTGAGTGG CTTAGAATTG CCTTTTGGAA CTTGGTCATA TTCAGAAATA
TTCTCTTTAA TTACTGAAAA AAATATTCCT AATACTATCA GGATGGTAGC AGTTATTACT
ATTGCCCAAA TTCTTTTGGT CATTATTAAG TATTTGAATA CACGGATACT TAACAGAAAT
ATCGCTTGTT TTAATCAAAA CGTGCGTGAA TTTCTAATGA AAAGCAACTT TATTGAAATC
AGTGAAAACA ATGTATCAAA GCAAATTTCT TTTCTTTCAA ATGATCTTAA CTTAATAGAA
GAGAACTATT TGAAGCAACT TTTTCAATTA ATTTCAATGA TTGTAACAAT TGTCGGTACT
TCAATAGTTG CAGTTGGCAA TAGTTTTTTA TTAACTTTAG TTTTTATTTC ATTCGCTATT
TTTTCAAGTA TTATCCCTAA GTTTTTTAGC AAAAAAACAG CTCAACAATC AAATAATTGG
AGTACTTCTA CTGGAACTTA CATAACATTT ATGTCCGATT TTTTAAAGAA TATTAGGACA
GTTTTAAATT ACAATGCATT AGATACCTTT ATTAAAAAAG GGCAAAAAAT TATTACTCAA
TCTACTGAAA ATAAGAGATT ACGTGATAAT ACAATTGCTA AAAGCAATTT TTGGGTTAAT
ATATTCGTTT ATTCTTTTGA CTTTTTACCT ATTGGAATAG GAATAATTAT GGTCATCAAA
GGGATGCTTA CTCTAGCCTC ATTTGTAGCT GTCCAATACT CCAGTACTTG GATTATTAAC
AGTTTTTACA GTATTAATAG CTGCCGTAAT CAAATGTCAT CAGCCAAACC TATGATAGAT
AAGCTACTTT CTTTTAAACC AGAAGAATTT GACAAAAATA TTCCTAATTC TAACCTAAAT
ACCTTAACCC TTAACAATAT TAGCTTTGGA TATAAGCCAG GAGAATTAGT ACTAGACAAA
ATCAACTTAA AAATTAAAAG AGGTGATAAA TTATTACTTA CTGGTAAGTC TGGTCAAGGA
AAGTCTACTC TTCTTAATCT TTTAACTGGT CAACTAAAAC CTACTAAAGG AAACGTGCTC
GTCAATGGGA TGACCAATCA AAATTATACA TTTAGTGAGG TACAACAGAC TTCTCAAATA
TTTAATGATA CTTTACTTTT CAACCTAACA TTAGGTAAAA AGTTTGATGA TTTCAAAATT
ACAGAAGCTA TCAAAAAGGC TGGACTATTG CCATATGTTA ATCGGTATGG CTTAAATACG
ATTATAGAAG AAAATGGAAA TAACTTATCT GGCGGTGAAA AGAAACGAAT AGAATTGGCA
CGAGCTTTTC TATATGAAAG AGATTTTTTA ATTGTTGACG AAGGGACAGC TTCGCTTGAT
CCCATCACAG CTAATCAGAT TCATGAAGTG TTCTTAGATT CTCCATTAAC AGTAATTGAA
ATAGATCATC ATATTCCACC TAAAATTATG CAAATGTTTA ATCATCATTA TGATCTGCAC
AATAAACGAT TAGAACGTAT ATTTTAA
|
|---|
| Protein sequence | MKRGVTMKKF INKKFFALSI LLSCLSGLEL PFGTWSYSEI FSLITEKNIP NTIRMVAVIT
IAQILLVIIK YLNTRILNRN IACFNQNVRE FLMKSNFIEI SENNVSKQIS FLSNDLNLIE
ENYLKQLFQL ISMIVTIVGT SIVAVGNSFL LTLVFISFAI FSSIIPKFFS KKTAQQSNNW
STSTGTYITF MSDFLKNIRT VLNYNALDTF IKKGQKIITQ STENKRLRDN TIAKSNFWVN
IFVYSFDFLP IGIGIIMVIK GMLTLASFVA VQYSSTWIIN SFYSINSCRN QMSSAKPMID
KLLSFKPEEF DKNIPNSNLN TLTLNNISFG YKPGELVLDK INLKIKRGDK LLLTGKSGQG
KSTLLNLLTG QLKPTKGNVL VNGMTNQNYT FSEVQQTSQI FNDTLLFNLT LGKKFDDFKI
TEAIKKAGLL PYVNRYGLNT IIEENGNNLS GGEKKRIELA RAFLYERDFL IVDEGTASLD
PITANQIHEV FLDSPLTVIE IDHHIPPKIM QMFNHHYDLH NKRLERIF
|
|---|
| |