| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1430 |
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| Symbol | |
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| ID | 4439341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | - |
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| Start bp | 1422001 |
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| End bp | 1423002 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 639673262 |
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| Product | cellobiose-specific PTS system IIC component |
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| Protein accession | YP_815229 |
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| Protein GI | 116630057 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
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| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000000729794 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.124134 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTTTCAT TTATATCATT TTTAATTTTG ACTCCTACTT CTATTGTCTT GGGGAAGAAA
ACTGTTTCTG CAGTTGAAAC TCAGTTCTTA GGGCCTAATG GTATTTTTTT AGGAATTATT
ATTGCCTTAA TATCTGTCGA AATTTATAGA TTTGCGATAA AGCGTAATTG GACTATTAAG
ATGCCAGATG GTGTTCCGCC GGCAGTTACT AAATCATTTG ATGCTTTGAT TCCAAGTGCA
TTAGTCGTTG TTTTCTTCTT TCTAATAAGA ATTCTATTCT CTTTAACTAG TTTTCATACA
GCGTATAACT TTATTTACAC GATTTTACAG ACACCATTGA AACATGTGGG TATTTCTTTA
CCATCAGTTT TGCTATACAA CTTCTTAGCA AGTTTCTTTT GGTTCTTTGG TATTAATGGA
CCTTCAATTA CAAATTCAGT ATGGCAACCT ATATTCTTTG TTTCAACGCA AGACAACTTA
AAGGCATTTC AGAACCATGC TCCATTGCCA CATATCTATA CTCAACCTTT CATTGATTTA
TTTACAACAT ATGGCGGTGG TGGTAGTACA CTTGCTTTAT TAATTGTTGT ATTTGCAATT
TGTAAATCAA AAAGATTGCT TGAGTTAGGT AAATTGGCAA TTTTGCCTGG AATTTTTGGT
ATTAATGAAC CTGTTATTTT TGGTTTACCG GTAGTCTTAA ACCCTGTTAT AGTTATTCCA
TTTATTTTAT GCCCAGTTTT AAATACATTA ATTTCGGGAA TTATAATGAA CTTGGGATGG
GTAGCTTGGA CAAATGGTGT TCAATTACCT TGGACTACTC CACCAATTAT TTCTGGGTGG
TTAGCAACAG GAAGTTGGAC AGGATCTGCA TTACAAATTG TGGAGATTAT TTTAAATATT
TTAATTTACT ATCCATTTGT GAAAATGCTA GATAAGCAAT ATCTTAAAGA AGAAAAAGCT
GCTGCTGAGA AAGATCTAGA TATTGACTTT AGCGAGGTAT AA
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| Protein sequence | MVSFISFLIL TPTSIVLGKK TVSAVETQFL GPNGIFLGII IALISVEIYR FAIKRNWTIK
MPDGVPPAVT KSFDALIPSA LVVVFFFLIR ILFSLTSFHT AYNFIYTILQ TPLKHVGISL
PSVLLYNFLA SFFWFFGING PSITNSVWQP IFFVSTQDNL KAFQNHAPLP HIYTQPFIDL
FTTYGGGGST LALLIVVFAI CKSKRLLELG KLAILPGIFG INEPVIFGLP VVLNPVIVIP
FILCPVLNTL ISGIIMNLGW VAWTNGVQLP WTTPPIISGW LATGSWTGSA LQIVEIILNI
LIYYPFVKML DKQYLKEEKA AAEKDLDIDF SEV
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