| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1365 |
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| Symbol | prfC |
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| ID | 4439416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | - |
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| Start bp | 1361816 |
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| End bp | 1363384 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 639673198 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_815165 |
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| Protein GI | 116629993 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000156295 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.000000502816 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAAAGT TAACTGATGA AGTGAAAAAA AGACGCACGT TTGCAATTAT TTCTCACCCT
GATGCGGGTA AGACAACAAT TACTGAGCAA ATGCTTCTTT TTGGTGGAGT GATTAGAAGT
GCAGGTACAG TTAAAGCACG TAAAAGTGGA CATTATGCAA CTAGTGACTG GATGGCAATT
GAAAAAAAGC GTGGTATTTC AGTTACTAGT TCAGTAATGC AATTTGAATA TCAGGGTAAG
AGAATCAACA TTCTTGATAC GCCAGGACAC CAAGATTTCT CCGAAGATAC TTACCGGACT
TTAATGGCAG TTGATGCTGC GGTAATGGTT ATTGACTCTG CTAAAGGTAT CGAACCTCAA
ACCAAAAAAT TATTTAAGGT TGTAAAGAAG CGTGGCATTC CTATCTTTAC CTTTATGAAC
AAGCTTGATC GTGACGGACG TGAACCGCTA GATTTAATTG CTGAATTAGA AGATTTACTT
GGTATTGAAG GCGTAGCCAT GAACTGGCCA ATCGGTATGG GGAAGCAATT AAAGGGATTA
TACGATATTG CAAATAATCG TGTTGAACTT TATCGAAAAG ATGATGATGA CCGCTATTTA
CCGCTGGATA AAAATGGAAA ATTGGCAGAA GATGAACCTT TAGCGCAAGA TAGCTTGTAT
CAATCAACTC TAGATGATAT TGACTTGTTG AAAGAAGCCG GAAATACTTT TGATAAAGAA
AAAATCTTAA AAGGAGATCA AACTCCCGTC TTCTTTGGTT CAGCTTTAAC TAATTTTGGT
GTTGAGACTT TCTTAGATAG TTTTGTTAAT TTAGCGCCAG CTCCTCAAGA ACATATTGTT
AATGGTGATG AAAAATTAGC TGCAGACGAT CCTGAATTCT CTGGTTTTGT ATTTAAGATT
CAGGCTAATA TGAATCCTAA CCATCGTGAT CGAATTGCAT TTGTAAGAAT CGGTAGCGGT
GAATTTAAAA AGGGGATTGA CGTAACTCTA GCTAGAACTG GAAAGCCAGT CAGATTAAAT
AATGCAACTG AATTTATGTC TAGTGAACGA GTTCAAGTTT CTGATGCGGT TGCTGGCGAT
ATAGTTGGTC TATATGATAC AGGAAACTTC CAAATTGGAG ACTCAATTTA CGCCGGTAAG
AAGAAAATTG TTTATCCAGC TTTACCGCAA TTTACACCAG AAATTTTCAT GCGTGTAACT
GCTAAAAATG TTATGAAGCA AAAGTCGTTC CATAAAGGGA TGAACCAATT AGTTCAAGAA
GGTGCAATTC AGCTTTATCG TGGTTATTCA ACTGATGATT ATATCCTGGG TGCAGTTGGT
CAATTACAGT TTGAAGTCTT TTCTTTTAGA ATGAAGAACG AATATAATTC AGAAGTAGAG
CTTCATACTT TAGGTAACCG TGTAGCGCGC TGGATTAATC CAGATCAGTT AGATCCAAAG
ATGTCATCTT CTCGTAATTT GTTAGTAAAA GATAGAGATG GTGAGCCACT ATTTTTATTT
GAAAATGCTT TTGCAGAAAG ATGGTTCAAA GACAAATATC CAGATGTTGA ATTAACTTCA
AGATTGTAA
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| Protein sequence | MTKLTDEVKK RRTFAIISHP DAGKTTITEQ MLLFGGVIRS AGTVKARKSG HYATSDWMAI
EKKRGISVTS SVMQFEYQGK RINILDTPGH QDFSEDTYRT LMAVDAAVMV IDSAKGIEPQ
TKKLFKVVKK RGIPIFTFMN KLDRDGREPL DLIAELEDLL GIEGVAMNWP IGMGKQLKGL
YDIANNRVEL YRKDDDDRYL PLDKNGKLAE DEPLAQDSLY QSTLDDIDLL KEAGNTFDKE
KILKGDQTPV FFGSALTNFG VETFLDSFVN LAPAPQEHIV NGDEKLAADD PEFSGFVFKI
QANMNPNHRD RIAFVRIGSG EFKKGIDVTL ARTGKPVRLN NATEFMSSER VQVSDAVAGD
IVGLYDTGNF QIGDSIYAGK KKIVYPALPQ FTPEIFMRVT AKNVMKQKSF HKGMNQLVQE
GAIQLYRGYS TDDYILGAVG QLQFEVFSFR MKNEYNSEVE LHTLGNRVAR WINPDQLDPK
MSSSRNLLVK DRDGEPLFLF ENAFAERWFK DKYPDVELTS RL
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