| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1081 |
|---|
| Symbol | |
|---|
| ID | 4439719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1087863 |
|---|
| End bp | 1088573 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 639672922 |
|---|
| Product | peptide ABC transporter ATPase |
|---|
| Protein accession | YP_814892 |
|---|
| Protein GI | 116629720 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 92 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAT TGGCTTTTAT TGAATTAAGA AACTGTTCAA AGAGGTATGG TACAGGCGCT
ACTACGGTCT GGGCAAATAA AGACCTTAGC TTTGATATTG ACCAGGGTGA ATTAGTAATT
ATTTTAGGAT CATCTGGTGC CGGGAAATCT ACTTTATTGA ATATTTTAGG CGGTATGGAG
AATGTTACTA AGGGAGAAGT TATTGTTAAT GGAAATAACA TTGCAAACTA TTCTGCCAAG
GAATTAACCA AATATCGGAG AAACAAAATT GGTTTTGTTT TTCAGTTTTA TAACTTAATA
CCTAATTTAA CCGCTAAAGA AAATGTAGAA CTGGCAAATG AGTTAGTAGC TAATCCGCTT
GATGCAGATG TTGCCCTCAA AGAAGTGGGG CTTGAAAATA GGATCAATAA CTTCCCATCC
CAACTCTCTG GTGGAGAGCA GCAACGAGTT GCGATTGCAC GTGCAATTGC TAAGAATCCA
GCTTTACTGT TATGTGATGA ACCAACTGGA GCTTTAGATT ATCAGACTGG TAAAAAAGTC
CTTAAGATTC TACAAGATCG TAGTTTAAAG AAAAATTCAA CAGTTATCAT TGTGACGCAT
AATGCAGCTT TAGTTCCAAT AGCTGACAAG GTTATCAGGA TCCAAGATGG AAAAATAAAG
CAAATTGAAT ATAACGCTCA TCCGCAAGAT ATTGAAAAAA TTGAATGGTA G
|
|---|
| Protein sequence | MNKLAFIELR NCSKRYGTGA TTVWANKDLS FDIDQGELVI ILGSSGAGKS TLLNILGGME
NVTKGEVIVN GNNIANYSAK ELTKYRRNKI GFVFQFYNLI PNLTAKENVE LANELVANPL
DADVALKEVG LENRINNFPS QLSGGEQQRV AIARAIAKNP ALLLCDEPTG ALDYQTGKKV
LKILQDRSLK KNSTVIIVTH NAALVPIADK VIRIQDGKIK QIEYNAHPQD IEKIEW
|
|---|
| |