| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1058 |
|---|
| Symbol | |
|---|
| ID | 4439731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 1060660 |
|---|
| End bp | 1062237 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 639672899 |
|---|
| Product | ABC-type multidrug transport system, ATPase and permease component |
|---|
| Protein accession | YP_814869 |
|---|
| Protein GI | 116629697 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000167907 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 86 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTAA AGTTTGCTAA CAAAAAGAAG CTAGCACTTT ATGTCTTTTT GGCCTGCATA
AGTGCTTGTG GTAATGTCGT TATCGCTTAT GTCACGAAGA TTATGCTTAA CAGCGCTCAA
TATCATCGTG GCTCATTAAA ACAGTTAATT CTTATTGCTG CGCTGGGAGC AGTATCACTC
ATCATTATTA TGTTTCTTAA TTTTGCTTAT AGATATTTAC GTTCCGATAT TACACGTGAT
ATCAACTTGA ATTTAAAAGA GAAAACTATC ACTTATTTAA TTGCTCAACA AAATGATTCA
CAAAAAGACG GTCTAAATTT AATGACCAAT GATCTAAAGC AAATCGAATC ACTAAAAATT
ACGAATGAAT TAATGATTAT TTCTGAGATT GCTGCTTTTG CAATTTCAAT TTTTGTCGGT
TTGATCAATT CCTGGCTTCT AACTATCATT TTCGTTATTG CTACAATTAT TCCTGGTTTT
ATTCAAAAGT TTTTCATTAA GGATATTCAA AATAAATCTG CTATCTGGGA AAAGCAAAAC
GCTGAATATA CTCAGGCTAC AGTTGATGCA ATTAATGGAT CAAAAACGGC CATGTTGTAT
GATGCACAAG TTCCTGTTAT TTCTTATGTC ATCAAGCAGG CAAAACAAAT GGAAAATGCA
TTACGCAGTC TTAACTACAC TCAAGGTGCC ATTTCTACGC TAATTATTAC CATTGCTGAT
ATCTTCAGCT TTATTATTCC ATTCTTAGTA GGTGCCATTT TAATGTTTAA TGGTCAAATT
GGAGCTGGTA CTTTAGTAAT GATCGTGCAG CTATCCAACG ATTTCATTAA TCCAATTACA
ATGATTCTTG ATCAGCTTAA TCAAATTCGA TCTACTAAGC CTATTTGGGA TAAAGTTCAA
AAAGCAATCA ACTTTAATAA TAAAAATGAA ACTGCTACAA ATCTATCTTT TAATCAGTTA
TCAGTTGAGA AATTAACATA TACAATTGAT GATAAAACTA TCCTAAAGAA CGTAAGCTTC
ACTGTTAATG CTAAAGAAAA AGTCCTTCTA ATGGCGCCAA GTGGTTTTGG AAAAACAACT
TTACTCCGAC TTTTAGTAGG TCAATTAAAG CCAACAAGTG GTTCTATTAT AATTGACCAA
CAGAATTTAA CTGGCAATTG GCAGAAATCG CACGATTACT TTAGCTATAT CAATCAAAAG
CCGTTCATGT TTGACCGCAG TCTACTTTTT AATCTAACTT TAGGTAAAAA GTATTCCAAA
GAGGAATTAA AGAATGCTAT TAAATTAGCT GGTCTAACAG AATTAGTCAA AGAAAAAGGA
CTTGACTACC AGGTTGGTCA GACTGGTAAT AGTCTCTCTG GTGGTCAAAT CCAAAGAATC
GAAATTGCCA GATCTATCTT AGCAAAGCGT CCAATTTTGC TAGCTGATGA AGCAACGAGT
GCTTTAGATA ATGAACTATC ACTACAAATT CATCAGACTT TGCTGAAAAA TTCAAATTTT
GCAGTAATTG AAGTTGCTCA TAAGATCTCC GACCAGGAAA AAGAAATGTT TGATAGGATT
ATTGACTTGA GCAAATAA
|
|---|
| Protein sequence | MSLKFANKKK LALYVFLACI SACGNVVIAY VTKIMLNSAQ YHRGSLKQLI LIAALGAVSL
IIIMFLNFAY RYLRSDITRD INLNLKEKTI TYLIAQQNDS QKDGLNLMTN DLKQIESLKI
TNELMIISEI AAFAISIFVG LINSWLLTII FVIATIIPGF IQKFFIKDIQ NKSAIWEKQN
AEYTQATVDA INGSKTAMLY DAQVPVISYV IKQAKQMENA LRSLNYTQGA ISTLIITIAD
IFSFIIPFLV GAILMFNGQI GAGTLVMIVQ LSNDFINPIT MILDQLNQIR STKPIWDKVQ
KAINFNNKNE TATNLSFNQL SVEKLTYTID DKTILKNVSF TVNAKEKVLL MAPSGFGKTT
LLRLLVGQLK PTSGSIIIDQ QNLTGNWQKS HDYFSYINQK PFMFDRSLLF NLTLGKKYSK
EELKNAIKLA GLTELVKEKG LDYQVGQTGN SLSGGQIQRI EIARSILAKR PILLADEATS
ALDNELSLQI HQTLLKNSNF AVIEVAHKIS DQEKEMFDRI IDLSK
|
|---|
| |